Transcript Information: R_Transcript_65236.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value2E-69
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8437334297696
Replicate 21.3785449768277
Replicate 31.6196683148795
Condition 2: 8 Hour
Replicate 11.5458248072756
Replicate 21.5810724534172
Replicate 31.5584716189221
Condition 3: 24 Hour
Replicate 11.7392278202806
Replicate 21.7265480444644
Replicate 31.160711612184


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_65236.p1 GENE.R_Transcript_65236~~R_Transcript_65236.p1 ORF type:5prime_partial len:396 (+),score=65.97,SEO_C|PF14577.2|2.3e+03,SEO_C|PF14577.2|3.5e-80 R_Transcript_65236:3-1190(+)
CTCAAGCATTTGATATATCTGGAGAAGGATGACGACAAATGTCCTCTTATCCGAGGCACCACCCAAGCACAGATTGAAGTGCTCAAAGGAAAAGAGGTGTTGTTACTCATATCAGAATTGGATATCCCCCATAAAGAGTTGATGATCCTAGGCAATGTGTACCAAGAATCAAAGGGGCAATATGAAATTGTTTGGCTCCCAATGGTGGGCAAGTCCTATTTGTCGAATGAAGAAGAAAAACAAAGATATAAGAAGCTCCAATCAAAGATGCCTTGGTATACTTTACAATACCCAGAATTACAAGAACCAGCAAGCATAAGATATATATGGGAGAAATGGCACATTGAAAACAAGACAAGTGTTGTTGTGTTAGACCCACAAGGGAAAGTTATATGCAAAAATGCCATTCACATAATCTTCATTTGGGGAAATATGGCCTTCCCTTTTACTACTCTAAAAGATGAAGATCTTTGGAAGGACAAGACCTGGAACCTTGAGCTACTTGTGGATTCCATTGATCTTACTATCAATGACTGGATACAAGAAGGAAAACATATATGCTTATACGGAGGGGATGACATAGAGTGGATCAGAAAATTCACAAGCACAGCAAAAGAAGTAGCCACAAATGCTGGAGTAGCCCTAGAGCTAGTGTACATTGGGAAAAGCAATCCAAATGATGAGCAATCAAAGGAAATCATAAATACCATAGAAAACGAGAATGTCAGCAAATTTTGGGATGAACCAACCTGGTGTTGGAAATTTTGGACAAGGCTTGAGTACATGTTATATTCGAGAATGCAACTTGCTAGTAAGAATGACAATGTAGAGAATGACCATATATTGCAAAGACTCAAGAAAATCCTTAGCTTCAATGTGAGCTTGGGCGACGAATCGCAAGGATGGGCAATCTTCTCCTGTGGATCGAGTGAAATAGTTACTGCGAAAGAAGAAATGATAACGCAAAGCTTTGGGAGATTCGAACTTCATTGGAAGCAAAATGCAAATGAGAAGGGGTTTGTAGCAGCTCTTAAGGAGGATCTCCAGCAACTTCCAACCCCTGAGCATTGCAGTAGGCTCATTCTTCCTCATATTGAAGATGATATTTCTGAAATGCCAGTATTTTGTCCTGACTGCAATTGTTTGATGGAGGTATACACCGTTGTACGTTGTTACAGTGATGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_65236.p1 GENE.R_Transcript_65236~~R_Transcript_65236.p1 ORF type:5prime_partial len:396 (+),score=65.97,SEO_C|PF14577.2|2.3e+03,SEO_C|PF14577.2|3.5e-80 R_Transcript_65236:3-1190(+)
LKHLIYLEKDDDKCPLIRGTTQAQIEVLKGKEVLLLISELDIPHKELMILGNVYQESKGQYEIVWLPMVGKSYLSNEEEKQRYKKLQSKMPWYTLQYPELQEPASIRYIWEKWHIENKTSVVVLDPQGKVICKNAIHIIFIWGNMAFPFTTLKDEDLWKDKTWNLELLVDSIDLTINDWIQEGKHICLYGGDDIEWIRKFTSTAKEVATNAGVALELVYIGKSNPNDEQSKEIINTIENENVSKFWDEPTWCWKFWTRLEYMLYSRMQLASKNDNVENDHILQRLKKILSFNVSLGDESQGWAIFSCGSSEIVTAKEEMITQSFGRFELHWKQNANEKGFVAALKEDLQQLPTPEHCSRLILPHIEDDISEMPVFCPDCNCLMEVYTVVRCYSDD*

Click here to download the sequence:
Link to NCBI Protein BLAST