Transcript Information: R_Transcript_65687.p1


Annotated TAIR IDAT4G37930.1
Annotated Gene Nameserine transhydroxymethyltransferase 1
Annotated Gene Symbol(s)SHM1, STM, SHMT1
Annotation TypeOrtholog
Chromosome Positionchr4:17831891-17834742 | Reverse length=517
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 139.824642083023
Replicate 210.599679707261
Replicate 317.855735495647
Condition 2: 8 Hour
Replicate 110.987854289673
Replicate 29.12600786942
Replicate 311.902119923232
Condition 3: 24 Hour
Replicate 114.698325323733
Replicate 210.281078128876
Replicate 316.934394341894


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_65687.p1 GENE.R_Transcript_65687~~R_Transcript_65687.p1 ORF type:complete len:517 (+),score=120.11,SHMT|PF00464.15|2e-211 R_Transcript_65687:249-1799(+)
ATGGCGATGGCAACCACCCTTCGCAAGCTCTCCAATTCCGTCAACAAACCTATTCGCAGCGCCTTCAATGGCGGTCCTCTCTACTATATGTCGTCCTTGCCAAACGAAGCTGTATACGAAAAGGAGAAACGCGTTTCGTGGCCGAAACAATTGAACGCTCCACTGGAAGCCGTTGATCCTGAAATCGCCGACATTATCGAGCATGAAAAGGCCAGACAGTGGAAGGGTCTGGAACTTATTCCATCAGAGAATTTCACTTCAGTCTCTGTGATGCAAGCTGTTGGGTCTGTCATGACCAACAAATACAGTGAAGGATATCCTGGAGCTAGATACTATGGAGGGAATGAATTCATTGATATGGCTGAAACCTTATGCCAAAAGCGTGCATTGGAAGCATTTCGATTGGACCCTGAAAAATGGGGAGTGAATGTCCAACCTCTTTCTGGATCACCAGCAAACTTCCAAGTTTACACTGCTCTTTTAAAGCCTCATGATAGAATCATGGCACTTGATCTTCCACATGGTGGACATCTGTCTCATGGATACCAGACCGATACCAAGAAGATATCAGCTGTATCTATCTTTTTCGAGACAATGCCATACAGGTTGAATGAAAGCACTGGTTACATTGATTATGATCAGTTGGAGAAAAGTGCCACACTATTCCGACCAAAACTGATAGTTGCTGGAGCTAGTGCCTATGCAAGACTGTATGATTATGAACGTATTCGCAAGGTCTGTAACAAACAGAAAGCAATTATGTTGGCAGATATGGCACATATTAGTGGGTTGGTCGCAGCTGGTGTAATACCATCACCATTTGATTATGCTGATGTTGTAACCACTACAACTCACAAATCCCTTCGTGGGCCACGTGGAGCAATGATTTTCTTCAGGAAGGGTGTAAAGGAGATTAACAAACAAGGGAAGGAGGTGTTGTATGACTATGAGGACAAGATAAATCAGGCTGTCTTTCCTGGACTCCAAGGTGGTCCTCACAATCACACAATAACTGCCTTAGCAGTGGCTTTAAAACAGGCTATGACTCCTGAATACAGAGCATACCAGGAGCAAGTCATGAGCAATTCTGCAAAGTTTGCCGAGGCTTTGGCAGGGTCGGGCTACGAACTTGTTTCTGGTGGAACAGAGAACCATTTAGTCTTAGTGAACTTGAAAAACAAGGGTATTGATGGCTCCAGAGTAGAGAAAGTTCTTGAAGCTGTTCACATTGCTGCAAACAAAAACACTGTGCCTGGGGATGTGTCTGCAATGGTTCCTGGTGGCATCAGGATGGGAACCCCGGCCCTTACATCTAGGGGCTTTGTTGAAGAAGACTTTGTTAAAGTGGCTGAGTACTTTGATGCTTCTGTGAAGCTGGCTCTAAAAATCAAGGCTGCATCTGCAGGAACAAAATTGAAGGACTTTGTTAGTACCTTGAATTCTGGTGATTTTCAGTCAGAGATTGCAAAACTCCGCCATGATGTTGAAGAGTATGCTAAACAATTCCCAACAATTGGATTTGAAAAGGAGACTATGAAGTACAAGGACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_65687.p1 GENE.R_Transcript_65687~~R_Transcript_65687.p1 ORF type:complete len:517 (+),score=120.11,SHMT|PF00464.15|2e-211 R_Transcript_65687:249-1799(+)
MAMATTLRKLSNSVNKPIRSAFNGGPLYYMSSLPNEAVYEKEKRVSWPKQLNAPLEAVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFQVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSATLFRPKLIVAGASAYARLYDYERIRKVCNKQKAIMLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQAVFPGLQGGPHNHTITALAVALKQAMTPEYRAYQEQVMSNSAKFAEALAGSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDASVKLALKIKAASAGTKLKDFVSTLNSGDFQSEIAKLRHDVEEYAKQFPTIGFEKETMKYKD*

Click here to download the sequence:
Link to NCBI Protein BLAST