Transcript Information: R_Transcript_65732.p1


Annotated TAIR IDAT1G30100.1
Annotated Gene Namenine-cis-epoxycarotenoid dioxygenase 5
Annotated Gene Symbol(s)NCED5, ATNCED5
Annotation TypeOrtholog
Chromosome Positionchr1:10571383-10573152 | Forward length=589
E-Value9.6E-292
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4340316372437
Replicate 22.6334342895018
Replicate 32.9895233811928
Condition 2: 8 Hour
Replicate 16.9307448240508
Replicate 25.0785731639303
Replicate 38.1220766165799
Condition 3: 24 Hour
Replicate 14.2802691441482
Replicate 22.8036346047344
Replicate 36.6776048197314


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_65732.p1 GENE.R_Transcript_65732~~R_Transcript_65732.p1 ORF type:complete len:590 (+),score=29.35,RPE65|PF03055.11|2.2e-100 R_Transcript_65732:122-1891(+)
ATGAGCTCTCTTACGTTGAGTAATTGGGCCACACCGGCCCATCTCCCCTGCTGTTTAAAACCGGCGATAACCACGTCGTCATCGGCGGCGGCGGCGGTAGTAATCTCGACGAAAAAGCCCAATAATAATGCCTCCCACATTTATTGTGCTCTCCAGTCATCACCTTCCCTTCTCAATTTCCCTACCACCAGTGAAAATAATCACCCTCATCAATCTCACTTGAATTTCTTCCAGAAGGCCGCGGCAGCCGCCTTGGACATGGTGGAGGGGGCTCTACTGGCCCAGGAGCGGGCCCACCCCCTTCCAAAGACGGTGGACCCGAAGGTCCAGATATCCGGGAACTTCGCCCCGGTTCCGGAGCAGCCTGTCTGCCACGGGTTATCTGTGGCAGGGACGATACCGGCTTGCATCGACGGTGTCTACGTCCGGAACGGGGCTAACCAGCTATTCAAGCCAACTTCAGGCCACCACCTATTCGACGGTGACGGCATGGTTCACGCCGTCACCATCCATAATGGAGCGGCGAGCTATGCTTGCCGCTTCACGGAGACCCGACGTCTGGCTCAAGAGCGGGAAATCGGGAAACCGATATTCCCGAAGGCCATTGGTGAACTTCACGGTCACACAGGAATCGCGAGACTGCTGTTGTTCTACACTCGTGGGCTCTTGGGCTTGCTAGACAGTGAGCAAGGCATGGGAGTAGCAAACGCCGGTCTTGTCTACTTCAACGGAAGGCTGTTGGCTATGTCGGAAGATGACATCCCATATCACGTGCACCTCACGCCGTCCGGCGACTTGAAAACGGTTGGGCGATTCGACTTCGAGGGTCAGCTCAACTCAGCCATGATAGCCCACCCGAAAATCAACCCAGTTAGTAAAGAGCTCTTCTCTCTCTCCTACGACGTCATCAAAAAACCGTATTTAAAATACTTCAAATTCTCAGCGCACGGAGAAAAGTCAGCTGACGTAGAAATTCCCTTAGAGAGACCCACAATGATGCACGATTTCGCCATAACGGAGAACTTTGTTGTGGTGCCTGACCAACAGGTGGTGTTTCGAATGGAGGAGATGGTAAAAGGTGGGTCCCCCATGGTGCATGACAAGAACAAAACGTCGCGTTTTGGGGTCCTCCCAAAGGAAGCCAAAGATGCAACAGAGATTATTTGGGTAGATTGTCCTGACACTTTCTGCTTTCATCTCTGGAACGCCTGGGAGGAGAGAGAAAATGACGAGGTTGTGGTCATTGGGTCATGTATGACGCCAGCTGACTCCATCTTTAACGACACCCATGAGAGCCTCGAGTCTGTTTTATCCGAAATCCGGCTTAATTTAAAAACCGGAAAATCAACTCGCCGGTCTATTATCAAAAACCCGGATGAACAGGTTAATCTCGAGGCAGGTATGGTGAATAAGAATCTACTTGGAAGGAAAACCCGGTTCGCTTATTTGGCAATTGCTGAGCCGTGGCCTAAGGTGTCCGGTTTTGCCAAGGTGGATTTGGAAACTGGTGAGGTAAAAAAGTTTATTTACGGCGGTGAAAAGTACGGCGGTGAACCTATGTTTTTACCGCGACATAATAATGTAAGTGAAAGTGAAGATGATGGACACATTATGGCATTTGTTCATGATGAGAAGGCTTGGAAGTCAGAATTCGTGATCGTAAATGCAATCACTATGGAAATTGAAGCCACCGTCAAGCTACCTTCAAGAGTACCATATGGGTTTCATGGTACCTTTGTGAGGAACGAGGATCTAAGACATCAAGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_65732.p1 GENE.R_Transcript_65732~~R_Transcript_65732.p1 ORF type:complete len:590 (+),score=29.35,RPE65|PF03055.11|2.2e-100 R_Transcript_65732:122-1891(+)
MSSLTLSNWATPAHLPCCLKPAITTSSSAAAAVVISTKKPNNNASHIYCALQSSPSLLNFPTTSENNHPHQSHLNFFQKAAAAALDMVEGALLAQERAHPLPKTVDPKVQISGNFAPVPEQPVCHGLSVAGTIPACIDGVYVRNGANQLFKPTSGHHLFDGDGMVHAVTIHNGAASYACRFTETRRLAQEREIGKPIFPKAIGELHGHTGIARLLLFYTRGLLGLLDSEQGMGVANAGLVYFNGRLLAMSEDDIPYHVHLTPSGDLKTVGRFDFEGQLNSAMIAHPKINPVSKELFSLSYDVIKKPYLKYFKFSAHGEKSADVEIPLERPTMMHDFAITENFVVVPDQQVVFRMEEMVKGGSPMVHDKNKTSRFGVLPKEAKDATEIIWVDCPDTFCFHLWNAWEERENDEVVVIGSCMTPADSIFNDTHESLESVLSEIRLNLKTGKSTRRSIIKNPDEQVNLEAGMVNKNLLGRKTRFAYLAIAEPWPKVSGFAKVDLETGEVKKFIYGGEKYGGEPMFLPRHNNVSESEDDGHIMAFVHDEKAWKSEFVIVNAITMEIEATVKLPSRVPYGFHGTFVRNEDLRHQA*

Click here to download the sequence:
Link to NCBI Protein BLAST