Transcript Information: R_Transcript_66002.p1


Annotated TAIR IDAT5G41620.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: intracellular protein transport protein USO1-related (TAIR:AT1G64180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16646330-16648776 | Forward length=623
E-Value7E-91
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7331447830929
Replicate 23.9737964546282
Replicate 34.796578610738
Condition 2: 8 Hour
Replicate 14.7657052581887
Replicate 25.0424538917036
Replicate 36.2129673935553
Condition 3: 24 Hour
Replicate 17.1492768816474
Replicate 24.3518430294159
Replicate 36.169688569461


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_66002.p1 GENE.R_Transcript_66002~~R_Transcript_66002.p1 ORF type:complete len:745 (+),score=170.70 R_Transcript_66002:325-2559(+)
ATGAAAGATACAGCCTCTTTGAGTCATCACAGTCAAAAACTTGGGGGACAGACAGGCAGGCAAAGGCAAGGCATCAAAATGAAAAAACAAATGGAAGATGTAGATGTAGAAGTGGAAGAGAGACAGAGAGAAAGTCCTCCTAATATGGAAGAAGAGAGAGAAAAAGGGAAAGAAAAAAAAGAAGAGGAGGAATTTCTGGGATTAAAGTTGTTAAAACGAGGAAATATTTTGGTGGGGAAAAGCAAAGGGGGTGTTTGTACTCCACCACCAACCTGGACTTTTGAGCCCCATTTTCAGCAACAGCAACAAGACCCACTTCCTTCCCATACTCATACTAATAATAATAGTATTAAGTCTAACGTTAACCTTAGTAATAGTACTACTATTGGGAGCTCCTCGGTTACAGCAAGGCAGTTGGGTGCTAATCTTTGGGAGGTTTTGCCTCACCTTAATTCCCTTGCTAAGATGAGCAATTCTCATAGAAAACCATCAGGGTTTAGTAGGTTGCCTTCTACTGCCCACAAAAATAAGGGTTTGGAGATGCATACCCTTTTGGAGGACCCACCTGATACTGCTTCTGATGATCAGGCAGTAAGTACTGGAAGCTTCCACAGGCAGATTGCAGCATCGCTGATGCGACATCATCGATCTGTTGACAGGAATGGTCGCGCTCTACAGCCAGTGTCTCCGGCTAGCTATTGCAGTTCTATGGAGGTAACGCCATATAATCCTGCTGCTACTCCAAGCAGCTCCATAGATTACAAGGGGAGGCTAGGTGATCCAAGTTATAGCCTTAAAACATCCACAGAGTTGCTCAAAGTTCTAAACCGCATCTGGTGCCTTGAAGAGCAGCATGCATCAAACGTATCACTAGTGAAGGCTCTCAGAACAGAGCTGGACAATTCCAGGTCGAGAATCAAAGATCTGCTTCGAGAGAAACAAATGGATAGACAGGTCATTGACGACTTGATGAAGCAAGTTGCAGAACATAAACTTGTCAAAAAGAATATGGAGCAAGATCGAGTACAGTCAGCACTGCAATCATTGAAGGAGGAACTAGAAGCTGAGAGGAAACTGAGGAAGCGCTCTGAGAGTATGCACCGCAAGCTGGCTCAAGAGGTTTCTCAGATAAAATCTTCCTTTTCTAAGGCTTTGGATGAACTAGAAACAGAAAGAAGAGCACGGATTCTCTTGGAAGAGTTGTGTGATGAGTTTGCTATGGGAGTAAGAGACTATGAGCAGGAACTTAGGTCCCTGAAATACAGGACAGAAAAGGAACAGGTTACCAGAGACCATGTTGATAGCTTGGTTCTCCATATATCTGAGGCGTGGTTAGATGAACGGGTTCAGATGAAGGTAGCAGAAGAGATGCAAGAAGATGTGAGAGGAAAGAGCACTGTTATGGACAAGCTGAGGCCTGAGATAGAAACTTTTCTAAAAGCTAGGCAAGCCTTGGATTCTAGGGAAAACACCGACTTCCTCACCCAAAATTCCAAGGGTAGTGGCTTGCGTCGTCGGTCTTTGGAGTCCTTCCCCTTGAATGAGGGTACAAGTGCTCCTCAAAATGACGATAATGAGGATGATGATGAATCTATTGATAGTGACTCCCATTGTTTTGAACTGAACCGAAACATGGGAGGAGAATATTCCAATGCGATTCATACGAAAAATGCTGACAACTCAGCAGAAAGAGGTCTAGAAGAGACGGTGAAGACGGATACTTCAAAGAGAAAGGGTGTATCCCAAGAGGTAAGCACTGGTCGTAATTTATCTAGCTTGCAGGCTCGATTTGAGAAGCACATGGCTAGGATGATTTTAAGCAACGGGAATTCTCAAGAGGCAGGGACTCCTGCTGAAACTAATACATCCAATATATTTGGTAACCAAGAAAGTGGTATCCAAGAAAGGAGGAGCAAACGGTTTGGTAATCGAGGAGGGAGTGCAATTCTTATGCTTGACAATTTGTTGAGGACCAACTCGTCATCAATAGAGGGAGAGAGGATTCATCCCATTAATGATTTACCTGATGATTCCCATGGTCAATTCTTAGTAACAGGACGTGCTAGTCCGGTGAAAAAGTGGGATTCGAAAATCAATTCAGAAGATCCTGAGATGTTGGAGTCGTCTTCAAGATGGCCTAGAGGGCCAAAGGAGAGCTCATTGAAGGCTAAACTTCTAGAGGCAAGGTTGGAGGGGCGGAGCACTCGATCAAAGGGCTGCAGAGGTACTACTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_66002.p1 GENE.R_Transcript_66002~~R_Transcript_66002.p1 ORF type:complete len:745 (+),score=170.70 R_Transcript_66002:325-2559(+)
MKDTASLSHHSQKLGGQTGRQRQGIKMKKQMEDVDVEVEERQRESPPNMEEEREKGKEKKEEEEFLGLKLLKRGNILVGKSKGGVCTPPPTWTFEPHFQQQQQDPLPSHTHTNNNSIKSNVNLSNSTTIGSSSVTARQLGANLWEVLPHLNSLAKMSNSHRKPSGFSRLPSTAHKNKGLEMHTLLEDPPDTASDDQAVSTGSFHRQIAASLMRHHRSVDRNGRALQPVSPASYCSSMEVTPYNPAATPSSSIDYKGRLGDPSYSLKTSTELLKVLNRIWCLEEQHASNVSLVKALRTELDNSRSRIKDLLREKQMDRQVIDDLMKQVAEHKLVKKNMEQDRVQSALQSLKEELEAERKLRKRSESMHRKLAQEVSQIKSSFSKALDELETERRARILLEELCDEFAMGVRDYEQELRSLKYRTEKEQVTRDHVDSLVLHISEAWLDERVQMKVAEEMQEDVRGKSTVMDKLRPEIETFLKARQALDSRENTDFLTQNSKGSGLRRRSLESFPLNEGTSAPQNDDNEDDDESIDSDSHCFELNRNMGGEYSNAIHTKNADNSAERGLEETVKTDTSKRKGVSQEVSTGRNLSSLQARFEKHMARMILSNGNSQEAGTPAETNTSNIFGNQESGIQERRSKRFGNRGGSAILMLDNLLRTNSSSIEGERIHPINDLPDDSHGQFLVTGRASPVKKWDSKINSEDPEMLESSSRWPRGPKESSLKAKLLEARLEGRSTRSKGCRGTT*

Click here to download the sequence:
Link to NCBI Protein BLAST