Transcript Information: R_Transcript_6675.p1


Annotated TAIR IDAT1G60900.1
Annotated Gene NameU2 snRNP auxilliary factor, large subunit, splicing factor
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22424008-22427806 | Forward length=589
E-Value4.2E-187
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 128.845352804089
Replicate 226.49015104336
Replicate 331.39291240509
Condition 2: 8 Hour
Replicate 136.792232304151
Replicate 242.230784617161
Replicate 348.153495531804
Condition 3: 24 Hour
Replicate 140.860138770551
Replicate 237.882478353505
Replicate 341.393845651386


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_6675.p1 GENE.R_Transcript_6675~~R_Transcript_6675.p1 ORF type:complete len:386 (+),score=117.70,RRM_1|PF00076.18|0.027,RRM_1|PF00076.18|0.0019,RRM_1|PF00076.18|1.4e-17,RRM_1|PF00076.18|0.13,RRM_6|PF14259.2|5.3e-06,RRM_6|PF14259.2|0.0028,RRM_6|PF14259.2|2.3e+02,RRM_5|PF13893.2|0.0078,RRM_5|PF13893.2|0.86,RRM_5|PF13893.2|0.00088,RRM_7|PF16367.1|1.2,RRM_7|PF16367.1|0.0076 R_Transcript_6675:741-1898(+)
ATGCCAGGGCTATTGCAGAACATGTTCCCTGGAGGGCCAGCTCAGTTGGGGCCTCTCTCTTTGATGCCAGCACACACTATGACTCAACAGGCTACCAGGCATGCTCGTCGAGTCTATGTTGGTGGGCTTCCTCCTTCAGCCAATGAGCAGACAATTGCAACCTTCTTTAGCCAAGTTATGACTGCAGTTGGTGGAAACTCCGCTGGACCAGGAGATTCGGTTGTCAATGTGTATATCAATCATGAAAAGAAGTTTGCCTTTGTAGAAATGAGATCTGTTGAAGAAGCAAGTAATGCTATGGCATTGGATGGCATTTCATTTGAGGGGGTTTCTGTAAGGGTGAAGAGACCTACCGATTATAATCCTGCATTAGCTGCAGCTCTTGGTCCAAGCCTCCCAAGTCCTCACCTAAACCTGGCTGCTGTTGGCCTTGTGCCAGGAGCTGTTGCTGGGGCAGAGGGACCTGATCGTATATTTGTTGGGGGAATACCGTACTATTTCACTGAAGAGCAGATGAGAGAGTTGCTGGAATCATTTGGGCCGTTGAAAGGGTTTGACCTTGTGAAGGATAGAGACACTGGCAATTCAAAAGGCTATGGTTTTTGTGTTTACCAGGACCCAGCAGTGACTGATGTGGCCTGTGATGCACTTAATGGTTTGAAAATGGGAGATAAAACTTTAACTGTACGGAGAGCTGCTGTCAGCAATGGACAGGCAAAATTAGAGCATGAAAATCTCTTAGCACAGGCACAACAACATGTAGCCATGCAGAAAATGGCTCTACAAGCTGGTGGCTTCAATCTTCTTGGGGTCTCTTTGCCACCTCTGGCGAGCACAGAAAATCCAACCAAGATTCTTTGCTTGAATCAGGTGGTGACTATTGATGAATTGAGAGATGATAATGAGTATGATGAAATCTTGGAAGACATGAGGGATGAATGTGGAAAATTTGGAGTCCTGGTGAGTGTTATTATTCCTCGGCCAAACATGGAGGGGGATCTGATTCCTGGAGTTGGAAAGGTGTTTTTGGAGTATTTGGATTCTGCTGCATGTGCTAATGCAAAGAGCATGCTTGGAGGAAGAAAGTTTGGAGGCAACACCGTAACTGCTGACTACTATCCAGAAGAGAAATTCTACAGTGCTGATTACAGCGGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_6675.p1 GENE.R_Transcript_6675~~R_Transcript_6675.p1 ORF type:complete len:386 (+),score=117.70,RRM_1|PF00076.18|0.027,RRM_1|PF00076.18|0.0019,RRM_1|PF00076.18|1.4e-17,RRM_1|PF00076.18|0.13,RRM_6|PF14259.2|5.3e-06,RRM_6|PF14259.2|0.0028,RRM_6|PF14259.2|2.3e+02,RRM_5|PF13893.2|0.0078,RRM_5|PF13893.2|0.86,RRM_5|PF13893.2|0.00088,RRM_7|PF16367.1|1.2,RRM_7|PF16367.1|0.0076 R_Transcript_6675:741-1898(+)
MPGLLQNMFPGGPAQLGPLSLMPAHTMTQQATRHARRVYVGGLPPSANEQTIATFFSQVMTAVGGNSAGPGDSVVNVYINHEKKFAFVEMRSVEEASNAMALDGISFEGVSVRVKRPTDYNPALAAALGPSLPSPHLNLAAVGLVPGAVAGAEGPDRIFVGGIPYYFTEEQMRELLESFGPLKGFDLVKDRDTGNSKGYGFCVYQDPAVTDVACDALNGLKMGDKTLTVRRAAVSNGQAKLEHENLLAQAQQHVAMQKMALQAGGFNLLGVSLPPLASTENPTKILCLNQVVTIDELRDDNEYDEILEDMRDECGKFGVLVSVIIPRPNMEGDLIPGVGKVFLEYLDSAACANAKSMLGGRKFGGNTVTADYYPEEKFYSADYSG*

Click here to download the sequence:
Link to NCBI Protein BLAST