Transcript Information: R_Transcript_66981.p1


Annotated TAIR IDAT5G57120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23122767-23124400 | Reverse length=330
E-Value5.8E-48
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 150.426311912267
Replicate 250.621849575119
Replicate 348.431388060437
Condition 2: 8 Hour
Replicate 141.114727076254
Replicate 238.873533046984
Replicate 334.787262551599
Condition 3: 24 Hour
Replicate 152.222704353129
Replicate 248.618515752196
Replicate 338.33956183617


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_66981.p1 GENE.R_Transcript_66981~~R_Transcript_66981.p1 ORF type:complete len:455 (+),score=143.94,SRP40_C|PF05022.8|5.5e+03,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|3.1e-28 R_Transcript_66981:187-1365(+)
ATGAAGAAACAAATTGAGAACAACAACAAAACACCCCTTTCTTTAACCCCTGAGAATAAGTTACTTCTTCACCAGTCCATTTGTGGGTACCTCCAACTCAATGGCTTCCTCAAAACCCTCAAGAAGTTCACTCGTGAGGCCGATATTGAGAAAGACAGCTGGAAGTGTTGTCTACTGAACTTGGAAGAAATGTGTCAAGAGCATCTACAGAAGCGCAACGATACCAATGATAAAAAGCAAGATAACAAGCAGGCAGATAAAGTTGAAAATCATGTTGAATCTGTGGAAAATGTAACAAAAGAAAATGGAGCTGTTGATGGGGAGAAGTCCAAGGCAATATTAGAAAATGACTCTGTTAATGGTGACAATGCAAAATCCAAGAAGAAAAAGAAAAGCAAAAATGCTAACGATACATTTAATGATGTTAATGGAGAAACTCACTTGAAAGATTTGGAACAGACGATGCAGGATTCGAGTGTGCCTACTGAACCTGAGAAGAAATCCAAGGACAAGAAGAAGAAACGCAAGCATGAATCAGAGCATTTGGACAAGGATTTACAGGAAAAACAGGCTGAAGTAGCAGCAGGAGAAACAACTTCAGACAAAACTGATAAAATGTCTCAAGATAAGAAAATAAAGGAGGACACTCCTATTCCTAAAGATGAGGTTGATAAGGAGAAGAAAAGTTCTAAAAAAAGAGAGAAGCGCTCATCTGATGACAATGAAGTTGACAATGTTGAAGCAACACCATTAGATGATTCCAAACGCAGGAAGACAGATGATCCATATCAGTCAAGTGGCACTGAGCAAGCCACACAAAGACCTACAGGAATGACCAATGGAGTCGTGGGAGAAGATGGAGGTCCAAAATCCAAAAAGCAGGAGAAAACAAAGGAACACAATGGTTCAGCTGAGCCAAGGACAACTGTTAACGCATTCCGAAGGGTGAAACCAGATGAAGTGGAATTTGTAGATGAGAGGCTTCAAGACAACTCCTGCTGGGCTAAGGATGGTGCAGATTCCGGCTATGGTGCAAAAGCCCAGGAGGTGTTGGGGCAGGTTAGAGGAAGGGATTTTCGGCATGAGAAGACCAAGAAAAAGCGTGGCTCATACAGGGGAGGGCAAATTGATTTGCAGTCACATTCAGTGAAGTTCAATTACGATGACGACGATGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_66981.p1 GENE.R_Transcript_66981~~R_Transcript_66981.p1 ORF type:complete len:455 (+),score=143.94,SRP40_C|PF05022.8|5.5e+03,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|3.1e-28 R_Transcript_66981:187-1365(+)
MKKQIENNNKTPLSLTPENKLLLHQSICGYLQLNGFLKTLKKFTREADIEKDSWKCCLLNLEEMCQEHLQKRNDTNDKKQDNKQADKVENHVESVENVTKENGAVDGEKSKAILENDSVNGDNAKSKKKKKSKNANDTFNDVNGETHLKDLEQTMQDSSVPTEPEKKSKDKKKKRKHESEHLDKDLQEKQAEVAAGETTSDKTDKMSQDKKIKEDTPIPKDEVDKEKKSSKKREKRSSDDNEVDNVEATPLDDSKRRKTDDPYQSSGTEQATQRPTGMTNGVVGEDGGPKSKKQEKTKEHNGSAEPRTTVNAFRRVKPDEVEFVDERLQDNSCWAKDGADSGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYDDDDE*

Click here to download the sequence:
Link to NCBI Protein BLAST