Transcript Information: R_Transcript_66986.p1


Annotated TAIR IDAT5G57120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23122767-23124400 | Reverse length=330
E-Value1E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.576022210554
Replicate 217.156269071724
Replicate 317.50101780945
Condition 2: 8 Hour
Replicate 123.980257116476
Replicate 224.669527459007
Replicate 319.061868380111
Condition 3: 24 Hour
Replicate 123.702750825063
Replicate 218.346852528445
Replicate 318.142905654921


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_66986.p1 GENE.R_Transcript_66986~~R_Transcript_66986.p1 ORF type:complete len:339 (+),score=117.51,SRP40_C|PF05022.8|3.8e+03,SRP40_C|PF05022.8|1.1e+04,SRP40_C|PF05022.8|6.1e+03,SRP40_C|PF05022.8|1.1e+04,SRP40_C|PF05022.8|1.9e-28 R_Transcript_66986:297-1313(+)
ATGGCTTCCTCAAAACCCTCAAGAAGTTCACTCGTGAGGCCGATATCGAGCAATGACACCAATGATAAAAAGCAAGATAACAAGCAGGCAGATAAAGTTGAAAATCATGTTGAATCTGTGGAAAATGTTACAACAAAAGAAAATGGAGCTGTTGATGGGGAGAAGTCCAAGGCAATATTAGAAAATGACTCTGTTAATGGTGACAATGCAAAATCCAAGAAGAAAAAGAAAAACAAAAATGCTAATGATACATCCAATGATGTTAATGAAGAAACTCACTTGAAAGATTTGGAACAGACGATGCAGGATTCGAGTGTGCCTACTGAACCTGAGAAGAAATCCAAGGACAAGAAGAAGAAACGCAAGCATGAATCAGAGCATTTGGACAAGGATTCACAGGAAAAAGAAGCTGAAGTAGCAGCAATAGAAACAACTTCAGACAAAACTGATAAAATGTCTCAAGATAAGAAAATAAAGGAGGACACTCCTATTCCTAAAGATGAGGTTGATAAGGAGAAGAAAAGTTCTAAAAAAAGAAAGAAGTGCTCATCTGATGACAAAGAAATCAACAATGTTGAAACAACACCATTAGATGATTCCAAACGCAGGAAGACAGATGATCCATATCAGTCAAATGGCACTGAGCAAGCCACAAAAAGACCTACTGGAGTGGCCAATGGAGTCGTGGGTGAAGATGGAGGTGCAAAATCTAAAAAGCAGGAGAAAACAAAGGAACACAATGGTTCAGCTGAGCCAAGGACAACTGTTAACGCATTCCGAAGGGTGAAACCAGATGAAGTGGAATTTGTAGATGAGAGGCTTCAAGACAACTCCTGCTGGGCTAAGGATGGTGCAGATTCCGGCTATGGTGCAAAAGCCCAGGAGGTGTTGGGGCAGGTTAGAGGAAGGGATTTTCGGCATGAGAAGACCAAGAAAAAGCGTGGCTCATACAGGGGAGGGCAAATTGATTTGCAGTCACATTCAGTGAAGTTCAATTACGATGACGACGATGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_66986.p1 GENE.R_Transcript_66986~~R_Transcript_66986.p1 ORF type:complete len:339 (+),score=117.51,SRP40_C|PF05022.8|3.8e+03,SRP40_C|PF05022.8|1.1e+04,SRP40_C|PF05022.8|6.1e+03,SRP40_C|PF05022.8|1.1e+04,SRP40_C|PF05022.8|1.9e-28 R_Transcript_66986:297-1313(+)
MASSKPSRSSLVRPISSNDTNDKKQDNKQADKVENHVESVENVTTKENGAVDGEKSKAILENDSVNGDNAKSKKKKKNKNANDTSNDVNEETHLKDLEQTMQDSSVPTEPEKKSKDKKKKRKHESEHLDKDSQEKEAEVAAIETTSDKTDKMSQDKKIKEDTPIPKDEVDKEKKSSKKRKKCSSDDKEINNVETTPLDDSKRRKTDDPYQSNGTEQATKRPTGVANGVVGEDGGAKSKKQEKTKEHNGSAEPRTTVNAFRRVKPDEVEFVDERLQDNSCWAKDGADSGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYDDDDE*

Click here to download the sequence:
Link to NCBI Protein BLAST