Transcript Information: R_Transcript_67416.p1


Annotated TAIR IDAT5G52960.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3143 (InterPro:IPR021489); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21477250-21478269 | Forward length=170
E-Value6.7E-63
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.2005642943612
Replicate 24.8092084752415
Replicate 34.0950592350664
Condition 2: 8 Hour
Replicate 15.1981165809794
Replicate 25.3716084869887
Replicate 36.5913669850567
Condition 3: 24 Hour
Replicate 16.7975630339012
Replicate 27.2696104723132
Replicate 36.8475500696438


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_67416.p1 GENE.R_Transcript_67416~~R_Transcript_67416.p1 ORF type:complete len:179 (+),score=37.91,DUF3143|PF11341.4|1.2e+04,DUF3143|PF11341.4|2.9e+03,DUF3143|PF11341.4|2.4e-22 R_Transcript_67416:89-625(+)
ATGTTATCCATTAATTATTCTCTCTCAAACACTCTCACCAACATCAAAGATACCACCTTTACTTCTTTCCTATCATCAAACTCACCATCTTCTAGCCTCCAAAGGCATTATCATTATCTCGCAAAACATTTACAATTCCCCAAAACCCCACCATTTTCCAATCATAAATCCTCAAGAAAACATTATCTTTTCCTCTCAAAAGCTTCAGACTCAGAATCAGAAACAGAGCCTGTTGTTACAGAAGAAGATGAATGGCTGAGCAAATTGCCTGATAAAAAGAAGCCTTTGTATGCTCACAGCTTGCCTTGCATTGAAGCTTGGCTTAGGAGCTTAGGGTTTTACCAAAGCAATGATGATAGGGCTGTTTGGTTCATTGAGAAATCTGATTGGCATGCTCAGCTTTCTCTTGATATGACTGATCTCTATATAAGATATTTGAAGAGTGGACCTGGCAATTTAGAGAAAGATGTGGAGAGGAGATTCAGTTATGCGCTGAGTAGAGAGGATATTGAGAATGCTGTGCTCGGAGGACCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_67416.p1 GENE.R_Transcript_67416~~R_Transcript_67416.p1 ORF type:complete len:179 (+),score=37.91,DUF3143|PF11341.4|1.2e+04,DUF3143|PF11341.4|2.9e+03,DUF3143|PF11341.4|2.4e-22 R_Transcript_67416:89-625(+)
MLSINYSLSNTLTNIKDTTFTSFLSSNSPSSSLQRHYHYLAKHLQFPKTPPFSNHKSSRKHYLFLSKASDSESETEPVVTEEDEWLSKLPDKKKPLYAHSLPCIEAWLRSLGFYQSNDDRAVWFIEKSDWHAQLSLDMTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP*

Click here to download the sequence:
Link to NCBI Protein BLAST