Transcript Information: R_Transcript_67418.p1


Annotated TAIR IDAT5G52960.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3143 (InterPro:IPR021489); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21477250-21478269 | Forward length=170
E-Value3E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.018356259416
Replicate 21.5141562800215
Replicate 32.202570922707
Condition 2: 8 Hour
Replicate 12.0012485774191
Replicate 22.0425805528006
Replicate 31.5708124575335
Condition 3: 24 Hour
Replicate 11.2141148053113
Replicate 21.0603489851239
Replicate 31.3679815429311


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_67418.p1 GENE.R_Transcript_67418~~R_Transcript_67418.p1 ORF type:5prime_partial len:208 (+),score=41.81,DUF3143|PF11341.4|3.3e-22 R_Transcript_67418:3-626(+)
CAACACTGCAAACTGGATCAATCAATGTGTAGTGTCCCCAAATTGGCGGAATCCTTGTTTCAGCATACACCATCATCATCAACAAAATGTTATCCATTAATTACTCTCTCAAACACTCTCACCAACATCAAAGATACCACCTTTACTCCTTTCCTATCACCAAACTCACCTTCATCTTCTACACTCAGAAGGCATTATCATTATCTCACAAATCATTTACAATTCCCCAAAACCCCACCGTTTTCCCATCATATACCCTCAAGAAAACATCATCTTTTCCTTTCAAAAGCTTCAGACTCAGAATCAGAAACAGAGCCTGTTGTTACAGAAGAAGATGAATGGCTGAGCAAATTGCCTGATAAAAAGAAGCCTTTGTATGCTCACAGCTTGCCTTGCATTGAAGCTTGGCTTAGGAGCTTAGGGTTTTACCAAAGCAATGATGATAGGGCTGTTTGGTTCATTGAGAAATCTGATTGGCATGCTCAGCTTTCTCTTGATATGACTGATCTCTATATAAGATATTTGAAGAGTGGACCTGGCAATTTAGAGAAAGATGTGGAGAGGAGATTCAGTTATGCGCTGAGTAGAGAGGATATTGAGAATGCTGTGCTCGGAGGACCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_67418.p1 GENE.R_Transcript_67418~~R_Transcript_67418.p1 ORF type:5prime_partial len:208 (+),score=41.81,DUF3143|PF11341.4|3.3e-22 R_Transcript_67418:3-626(+)
QHCKLDQSMCSVPKLAESLFQHTPSSSTKCYPLITLSNTLTNIKDTTFTPFLSPNSPSSSTLRRHYHYLTNHLQFPKTPPFSHHIPSRKHHLFLSKASDSESETEPVVTEEDEWLSKLPDKKKPLYAHSLPCIEAWLRSLGFYQSNDDRAVWFIEKSDWHAQLSLDMTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP*

Click here to download the sequence:
Link to NCBI Protein BLAST