Transcript Information: R_Transcript_67606.p1


Annotated TAIR IDAT1G09520.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:3071248-3072030 | Reverse length=260
E-Value3.8E-31
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.9752128451379
Replicate 26.6120946062375
Replicate 38.922237571982
Condition 2: 8 Hour
Replicate 111.769448897295
Replicate 214.886664430182
Replicate 314.240490099972
Condition 3: 24 Hour
Replicate 117.440323170217
Replicate 211.880595258736
Replicate 314.148405792083


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_67606.p1 GENE.R_Transcript_67606~~R_Transcript_67606.p1 ORF type:complete len:362 (-),score=55.35 R_Transcript_67606:465-1550(-)
ATGAACAGAGATCTGCCACCACCACCACAGCAACCCTCACACACCTCCACCGCCGGCACTTCCGTCGCCGCAATCGCCGCCAACGGCTGCACAAACTGCTGCTCCGACGACCGCTGGATCCTCCACTACGTAAGAATCCGAAACCTTTACCGAAAAATCTGCACATCCTGCGTTCTAAAGCTCCACCCGACGTCGTTTTGCCCTATCTGCTACAATCTCCATGATCCGAACTCTCTCACCACAATCCCTAACCCTAGCTCAACAACGACGACGACGACAATCACAAACCCTAAGATCATCAAGTGCTTCAAGTGCAGTTCTTTTTCTCACACCTCTTGTCTCGCTCCTAATGGCCCTAAAACCCCTTACCTTTGCCCCCCTTGCTTCAACCCCAATTTGAAATTCTTCGACATCAAGAAACCCAAAAAGACCGAATCTTTGAATGGCGATCAAGAAGGCTGTGATCGGAAAAAGCAGGTGATTGATGAGAGGGGGTCGAAGGAGTTGTTGCTTGCGGCGAAAATATCGTCGATGTCGATGAATAGGGCGGTGGTGGTGGCTAGGGCTGAGGTGGAGAAGAAGGTTAAGGAAGCTGCATTGGCTAGGAAGAGAGCTAAGGAGGCTATTGATTATGTTACTTCGCTTTCAAATCGTATCCAGGCTGTTGGGGCTAAGCGTAGGGAGGTTGCTGAAGTGGCCGTGGCGGGAATGGCGGCGGGTGCGGGTGCCCCTCCTCCGGTTTCGAGTGCGATGGCAGGGTTGAAGAGTGGGCAGGTCATGCCTGTGAAATTGGAGACTAAGAATGGTGTTGCAAAGGTTAATCCTAATGCTAATACTAATGGTGGTGGTAGTGTTAAAATTGAGAATAAGAACGGGCCGGTCGAAGTTGCGGGAGCGGGGGCAATGGTTCCTCCTCCGGTGGTTGCATCGGCGGTGCCGCCACATTTGCAGAACAAGACTAATAATGGCATAAGTAATATCAGTACTAATAGTAATAATAATAGTAATCTGAATAATGGTGGTGGTGGTGGTGGAGGTGGAGGGAAGGAAGGTACAGGGGCAGCGGTGGCTGGGGCGTGCAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_67606.p1 GENE.R_Transcript_67606~~R_Transcript_67606.p1 ORF type:complete len:362 (-),score=55.35 R_Transcript_67606:465-1550(-)
MNRDLPPPPQQPSHTSTAGTSVAAIAANGCTNCCSDDRWILHYVRIRNLYRKICTSCVLKLHPTSFCPICYNLHDPNSLTTIPNPSSTTTTTTITNPKIIKCFKCSSFSHTSCLAPNGPKTPYLCPPCFNPNLKFFDIKKPKKTESLNGDQEGCDRKKQVIDERGSKELLLAAKISSMSMNRAVVVARAEVEKKVKEAALARKRAKEAIDYVTSLSNRIQAVGAKRREVAEVAVAGMAAGAGAPPPVSSAMAGLKSGQVMPVKLETKNGVAKVNPNANTNGGGSVKIENKNGPVEVAGAGAMVPPPVVASAVPPHLQNKTNNGISNISTNSNNNSNLNNGGGGGGGGGKEGTGAAVAGACK*

Click here to download the sequence:
Link to NCBI Protein BLAST