Transcript Information: R_Transcript_67610.p1


Annotated TAIR IDAT1G09520.1
Annotated Gene NameLOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT3G17460.1); Has 56 Blast hits to 56 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 4; Plants - 46; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:3071248-3072030 | Reverse length=260
E-Value9E-18
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.2151317013482
Replicate 24.52861381528
Replicate 35.2614915486961
Condition 2: 8 Hour
Replicate 16.0357314155674
Replicate 28.8942443177825
Replicate 35.6437780920531
Condition 3: 24 Hour
Replicate 16.7522962434424
Replicate 25.2512521168041
Replicate 36.0696996190556


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_67610.p1 GENE.R_Transcript_67610~~R_Transcript_67610.p1 ORF type:complete len:357 (+),score=52.96 R_Transcript_67610:1320-2390(+)
ATGAACAGAGATCTACCACCACCACAGCAACCCTCACACACCTCCACCGCCGGCACTTCCGTCGCCGCAATCGCCGCCAACGGCTGCACAAACTGCTGCTCCGACGACCGCTGGATCCTCCACTACGTAAGAATCCGAAACCTTTACCGAAAACTCTGCACATCCTGCGTTCTAAAGCTCCACCCGACGTCGTTTTGCCCTATCTGCTACAATCTCCATGATCCAAACTCTCTCACCACAATCCCTAATCCTAATTTAACAACAACGACGACGACGACGACAATCACAAACCCTAAGATCATCAAGTGCTTCAAGTGCAGTTCTTTTTCTCACACCTCTTGTCTCGCTCCTAATGGCCCTAAAACCCCTTACCTTTGCCCCCCTTGCTTCAACCCCAATTTGAAATTCTTCGACATCAAGAAACCCAAAAAGACCGAATGTTTGAACGGCGATCAAGAAGGCGGTGATCGGAAAAAGCAGGTGATTGATGAGAGGGGGTCGAAGGAGTTTTTGCTTGCGGCAAAAATATCGTCGATATCGATGAATAGGGCGGTGGTGGTGGCTAGGGCTGAGGTGGAGAAGAAGGTTAAGGAAGCTGCATTGGCTAGGAAGAGAGCTAAGGAGGCTATTGATTATGTTACTTCGCTTTCAAATCGTATCCAGGCTGTTGGGGCTAAGCGTAGGGAGGTTGCTGAGGTGACTGTGGTGGGAGTGGCGGCGGGTGCGGGTGCCCCTCCTCCGGTTTCTAGTGCGATGGTCGGGTTGAAGAGTGGGCAGGTCATGGCTGTGAAATTGGAAACTAAGAATGGTGTTGCAAAGGTTAATGCCAATGCTAGTGGTGGTGGTGGTGTTAAAATTGAGAATAAGAACGGGCCAGTCGAGGTTGTAGGAGCGGGGGAAATGGCTCCTCCTCCGGTGGTTGCAACTGCGGTGCCGCCACATTTGCAGAACAAGACTAATAATGGCATAAGTAATATCAGTACTAGTAATAATAATAGTAATCTGAATAGAGTTGGTGGTGGTAGAGGTGGAGGGAAGGAAGGTACAGGGGCGGCGGGGGTGTGCAAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_67610.p1 GENE.R_Transcript_67610~~R_Transcript_67610.p1 ORF type:complete len:357 (+),score=52.96 R_Transcript_67610:1320-2390(+)
MNRDLPPPQQPSHTSTAGTSVAAIAANGCTNCCSDDRWILHYVRIRNLYRKLCTSCVLKLHPTSFCPICYNLHDPNSLTTIPNPNLTTTTTTTTITNPKIIKCFKCSSFSHTSCLAPNGPKTPYLCPPCFNPNLKFFDIKKPKKTECLNGDQEGGDRKKQVIDERGSKEFLLAAKISSISMNRAVVVARAEVEKKVKEAALARKRAKEAIDYVTSLSNRIQAVGAKRREVAEVTVVGVAAGAGAPPPVSSAMVGLKSGQVMAVKLETKNGVAKVNANASGGGGVKIENKNGPVEVVGAGEMAPPPVVATAVPPHLQNKTNNGISNISTSNNNSNLNRVGGGRGGGKEGTGAAGVCK*

Click here to download the sequence:
Link to NCBI Protein BLAST