Transcript Information: R_Transcript_68749.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value2E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.26607814802797
Replicate 20.12242740767521
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.13038415067747
Replicate 31.0054828040448
Condition 3: 24 Hour
Replicate 10.13386476517612
Replicate 20.32150523164107
Replicate 30.19143765032272


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_68749.p1 GENE.R_Transcript_68749~~R_Transcript_68749.p1 ORF type:3prime_partial len:343 (+),score=26.30,DDE_Tnp_4|PF13359.2|5.5e+03,DDE_Tnp_4|PF13359.2|3.6e-25 R_Transcript_68749:23-1027(+)
ATGGAGGTGTTCCTTATCCTAGTTGCGCTTCTTAATATAGCGATGATGTTGTACTTGGTGGTTCGGGTTTTAAGAATCACTTTTAATAATATAAATCAACTAGAGTATCGAAAAAAAGATAAAAAACAACATAGGCTAGCAAATCTAACTATGTTGATTAGGGAAAGTGATGTTACATGTCGGAATGAACTCCGAATGAATAGGCAAACCTTTGGTATACTATGTGAAATGGCAAGAGATGTTGGAGGGTTGAGTGCAACTAGAAATATGTCCATAGAAGAAATTGTTGCCATGTTCTTGTATACTTTAGCACATCATAAGAAAAATAGATCCGTAGCAAATTATTTTCTTAGGAGTGGAGAAAGTGTAAGTAGGCAATTCAATCGATGCCTTCTTGCCGTTTTGAAGTTGCATCGCCACTTGCTCAAGAAACCCACACCTATATCCGAAGAATGTGAAGATGATAGGTGGAAATGTTTCAAGAATTGTTTAGGAGCTTTAGATGGCACCTACATTAATGTCCACATTGCAAGTGAGGATAGACCAAGGTATCGAAAAAGAAAAGGCTCTCTTGCTATGAATGTGTTAGGTGTTTGTACACCTAATATGGAATTCATTTTTGTTTCACCGGGTTGGGAAGGTTCCGCACATGATGGTCGTGTCCTTCGAGATGCTCTATCTAAACCTAATGGGTTGAAGGTGCCTCAAGGTAAACCTTGCTTAGACATGGGAATGCTAGCATTATTGTTGACATTAAGTGTAACCATTTTTTCCTTTTTTTTCTTTTTATACTTTCAAGGTTGCTATTACTTGGTAGATGCTGGATACACTAATTGTCAGGGGTTTCTTGCCCCTTATAGAGGTCATCGCTATCACCTAAAAGAATGGGGGGATCGACAACCTGTGAGTGCAGAGGAGTATTTCAACATGAAACATGCCAAAGCTAGAAATGTAATCGAAAGATGCTTCGGTCTCATGAAAGGAAGATGGGCTATTCTTAGGAGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_68749.p1 GENE.R_Transcript_68749~~R_Transcript_68749.p1 ORF type:3prime_partial len:343 (+),score=26.30,DDE_Tnp_4|PF13359.2|5.5e+03,DDE_Tnp_4|PF13359.2|3.6e-25 R_Transcript_68749:23-1027(+)
MEVFLILVALLNIAMMLYLVVRVLRITFNNINQLEYRKKDKKQHRLANLTMLIRESDVTCRNELRMNRQTFGILCEMARDVGGLSATRNMSIEEIVAMFLYTLAHHKKNRSVANYFLRSGESVSRQFNRCLLAVLKLHRHLLKKPTPISEECEDDRWKCFKNCLGALDGTYINVHIASEDRPRYRKRKGSLAMNVLGVCTPNMEFIFVSPGWEGSAHDGRVLRDALSKPNGLKVPQGKPCLDMGMLALLLTLSVTIFSFFFFLYFQGCYYLVDAGYTNCQGFLAPYRGHRYHLKEWGDRQPVSAEEYFNMKHAKARNVIERCFGLMKGRWAILRS

Click here to download the sequence:
Link to NCBI Protein BLAST