Transcript Information: R_Transcript_68750.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value4E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.452972016296
Replicate 20.78344404538426
Replicate 32.2792773727515
Condition 2: 8 Hour
Replicate 12.0709438015083
Replicate 22.058091114736
Replicate 30.9482184652441
Condition 3: 24 Hour
Replicate 11.9417050889103
Replicate 21.1521403898063
Replicate 32.0689870102042


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_68750.p1 GENE.R_Transcript_68750~~R_Transcript_68750.p1 ORF type:complete len:402 (+),score=45.06,DDE_Tnp_4|PF13359.2|3e-33,DDE_Tnp_1|PF01609.17|1.1e-06 R_Transcript_68750:23-1207(+)
ATGGAGGTGTTCCTTATCCTAGTTGCGCTTCTTAATATAGCGATGATGTTGTACTTGGTGGTTCGGGTTTTAAGAATCACTTTTAATAATATAAATCAACTAGAGTATCGAAAAAAAGATAAAAAACAACATAGGCTAGCAAATCTAACTATGTTGATTAGGGAAAGTGATGTTACATGTCGGAATGAACTCCGAATGAATAGGCAAACCTTTGGTATACTATGTGAAATGGCAAGAGATGTTGGAGGGTTGAGTGCAACTAGAAATATGTCCATAGAAGAAATTGTTGCCATGTTCTTGTATACTTTAGCACATCATAAGAAAAATAGATCCGTAGCAAATTATTTTCTTAGGAGTGGAGAAAGTGTAAGTAGGCAATTCAATCGATGCCTTCTTGCCGTTTTGAAGTTGCATCGCCACTTGCTCAAGAAACCCACACCTATATCCGAAGAATGTGAAGATGATAGGTGGAAATGTTTCAAGAATTGTTTAGGAGCTTTAGATGGCACCTACATTAATGTCCACATTGCAAGTGAGGATAGACCAAGGTATCGAAAAAGAAAAGGCTCTCTTGCTATGAATGTGTTAGGTGTTTGTACACCTAATATGGAATTCATTTTTGTTTCACCGGGTTGGGAAGGTTCCGCACATGATGGTCGTGTCCTTCGAGATGCTCTATCTAAACCTAATGGGTTGAAGGTGCCTCAAGGTTGCTATTACTTGGTAGATGCTGGATACACTAATTGTCAGGGGTTTCTTGCCCCTTATAGAGGTCATCGCTATCACCTAAAAGAATGGGGGGATCGACAACCTGTGAGTGCAGAGGAGTATTTCAACATGAAACATGCCAAAGCTAGAAATGTAATCGAAAGATGCTTCGGTCTCATGAAAGGAAGATGGGCTATTCTTAGGAGTCCTTCATTTTTTCCAATACGAAATCAATGTCATATAGTCCATGCATGTTCTCTTTTGCATAACTTGATTCGAAAGTATATGCCCACTGAGTATATGATTGATTATGGGGAAGAGGATGATGATGATTATGGTGATGATGATGACGGTGATGAACAAGAAGTAGAATTTATCACTAATGTTCAATCATCAAATGCTTGGACTACTTTCCGAAACGACCTAGCACAAAACTTGTTCAATGAGTGGAGGGTTAGATCTACAAGAGGAAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_68750.p1 GENE.R_Transcript_68750~~R_Transcript_68750.p1 ORF type:complete len:402 (+),score=45.06,DDE_Tnp_4|PF13359.2|3e-33,DDE_Tnp_1|PF01609.17|1.1e-06 R_Transcript_68750:23-1207(+)
MEVFLILVALLNIAMMLYLVVRVLRITFNNINQLEYRKKDKKQHRLANLTMLIRESDVTCRNELRMNRQTFGILCEMARDVGGLSATRNMSIEEIVAMFLYTLAHHKKNRSVANYFLRSGESVSRQFNRCLLAVLKLHRHLLKKPTPISEECEDDRWKCFKNCLGALDGTYINVHIASEDRPRYRKRKGSLAMNVLGVCTPNMEFIFVSPGWEGSAHDGRVLRDALSKPNGLKVPQGCYYLVDAGYTNCQGFLAPYRGHRYHLKEWGDRQPVSAEEYFNMKHAKARNVIERCFGLMKGRWAILRSPSFFPIRNQCHIVHACSLLHNLIRKYMPTEYMIDYGEEDDDDYGDDDDGDEQEVEFITNVQSSNAWTTFRNDLAQNLFNEWRVRSTRGN*

Click here to download the sequence:
Link to NCBI Protein BLAST