Transcript Information: R_Transcript_68962.p1


Annotated TAIR IDAT5G19420.2
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6547945-6552981 | Reverse length=1139
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.8216667875458
Replicate 26.7856412936759
Replicate 38.5281469046579
Condition 2: 8 Hour
Replicate 18.4906781202137
Replicate 29.5989247196445
Replicate 311.893049394694
Condition 3: 24 Hour
Replicate 110.283654318107
Replicate 28.6877787967795
Replicate 39.2237969653035


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_68962.p1 GENE.R_Transcript_68962~~R_Transcript_68962.p1 ORF type:complete len:1018 (+),score=204.60,RCC1|PF00415.14|0.16,RCC1|PF00415.14|6.3e-11,RCC1|PF00415.14|5.6e-09,RCC1|PF00415.14|4.4e-12,RCC1|PF00415.14|1.3e-13,RCC1|PF00415.14|1.1e-08,RCC1|PF00415.14|7.6e-14,BRX|PF08381.7|1.7e-29,RCC1_2|PF13540.2|7.6e+03,RCC1_2|PF13540.2|0.0012,RCC1_2|PF13540.2|1.9e-06,RCC1_2|PF13540.2|0.0059,RCC1_2|PF13540.2|26,RCC1_2|PF13540.2|0.0005,RCC1_2|PF13540.2|7e-05,RCC1_2|PF13540.2|3e+02,BRX_N|PF13713.2|1.1e+04,BRX_N|PF13713.2|6e-18,FYVE|PF01363.17|1.5e-12,BRX_assoc|PF16627.1|2.6e-09 R_Transcript_68962:446-3055(+)
ATGGGTGCAGATACTTTTAGAATGAGTTTATCAAGTGCTGTAAGCTCATCAAGTCAGGGTTCTGGTCATGATGATGGGGATGCCCTGGGTGATGTTTTCATCTGGGGAGAAACTACAGGAGATGGCATTTTGGGTGGTGGAGTGCATAGAGTAGGGAGCTGTTATGGTGTCAAGATGGATTCTCTTTTGCCCAAGGCCTTAGAGTCTGCTGTGGTCCTTGATGTTCAGAACATAGCTTGTGGTGGACGTCATGCAGCTTTGGTTACTAAACAAGGGGAGATTTTTTCTTGGGGTGAGGAATCTGGCGGTAGGCTAGGGCATGGGGTTGATGCTGATGTGTCACATCCAAAGCTTATAGATGCCCTCAGCAATACTAACATTGAGCTTGTAGCATGTGGTGAGCATCATACTTGTGCTGTTACCCTTTCTGGTGAGCTATATACATGGGGTGATGGTGCTTTCAATTTTGGTCTTCTTGGGCATGGAAATTATGTGAGTCATTGGGTTCCAAAGAGAGTGAATGGTCCATTGGAGGGTATACATGTTTCATACATCTCCTGCGGACCCTGGCATACAGCTGTTGTCACCTCTGCTGGCCAGTTGTTTACTTTTGGTGACGGTACATTTGGTGTTTTAGGCCATGGAGACCGCAGAAGTGTTTCCGTGCCACGAGAAGTGGAGTCCCTCAAGGGTCTCCGCACAGTTCGAGCTGCTTGTGGTGTCTGGCATACTGCTGCAGTCATCGAAGTTATGGTTGGGAATTCAGGGTCAAGCAACTGCTCTTCAGGTAAGCTGTTCACATGGGGAGATGGAGATAAAGGTCGACTTGGGCATGGTGACAAGGACTCAAAACTGGTTCCTACATGTGTTGCAGCTCTTGTCGAGCCTAACTTTTGTCAGGTTGCCTGTGGACACAGCATCACAGTCGCGCTTACAACTTCTGGTCATGTTTATACTATGGGCAGCCCTGTTTATGGTCAACTAGGTAATCCCCATACCGATGGGAAACTCCCAGTTCGTGTGGAAGGAAAACTCTCAAGGTGCTTTGTAGAAGAGATAGCTTGTGGCGCTTACCATGTAGCTGTGTTGACCTCAAGAACTGAGGTTTACACTTGGGGAAAGGGGGCAAATGGACGATTAGGTCATGGGGATACAGAAGATAGAATTACCCCGACATTGGTAGAAGCTCTAAAGGACAAGCAAGTGAGAAGTATTGCATGTGGTACAAACTTCACTGCTGCTATCTGCTTGCATAAGTGGGTCTCCGGTGTTGATCAATCAATGTGTTCTGGCTGTCGTCTGCCTTTTAACTTCAAAAGAAAACGTCATAATTGTTATAACTGTGGGCTTGTATTTTGTCATTCATGTAGTAGTAAAAAGTCTCTTAAGGCCTCTATGGCACCAAATCCAAACAAACCTTATCGTGTCTGTGATTGTTGTCTTGCGAAACTCAAGAAAGCAATTGAGACTGATGCGTCATCCTTCTCCTTGGCCAGTAGAAGAGGAGCTGTGAATCAGGGTTTCACTGATCTAAATGAGAGAGAGGAAAAGGTTGAACCTGCATCCCGCGGTCAGCTCACTAGATACTCTTCAATGGACTCCTTGACACAGTTGGACAGCCGTTCCAAGAAAAACAAGAAATATGAATTTAATAGTAGTCGTGTATCACCCGTGCCAAATGGAGGTTCTCAATGGGGAGCTAATATATCTAGGTCTTTTAATCCTGTATTTGGGTCATCAAAGAAATTCTTCTCCGCTTCAGTTCCTGGGTCCAGGATAGTTTCTCGAGCAACATCACCAATATCTAGACGACCCAGTCCACCTCGTTCAACCACACCCACACCAACACTCTCAGGACTTATGTCTCCAAAGTTGACTGTGGATGATGAGAAAAGGACTAATGAAGGCCTCAGCCAAGAGGTTATCAGATTGAGAGCACAGGTGGAAAGCCTCACTCGCAAAGCCCAACTGCAAGAGATTGAATTGGAAAAAACAACTAAACAATTGAAGGAGGCAATAGCAATTGCAGGTGAAGAGACTGCAAAATGCAAAGCAGCAAAGGAAGTGATCAAATCACTTACTGCCCAGCTGAAAGAGATGGCTGAAAGGCTGCCTGTTGGAGCTACACGAAATAGCAAATCTCCTCCCTTTCCAGCTTTGATGTCCACTCCAACTCTAGGCGATGTTTCAGCCTCGCTTGACCAGTTCAATGATCAGATACCTGGCCTTCTGGCAGATTCAAATGGTTTAAATGGTGTAACACTTTCAAATGGGTCGAGCACCCCAAGCAGCAACCGAAGCTCTGTCCAGAGAATAGTAAGTTCTGTAAGTTCAGATACAATAAGAAATGGGAATAGAACTAGAGAAGGTGAACCTCGTACTGAGAATGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACTTTCGTCTCTTTACCTGGCGGTATTAAGGATCTAAAGCGAGTTCGGTTTAGCCGGAAAAGGTTCAGTGAAAAACAGGCAGAACAATGGTGGGCAGAAAATCGGGCCAGAGTATACGACCAATACAATGTACGTACTGCTGACAAGTCAAGTGTTGGTGTTGGGAGTGAAGACATAGCTCATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_68962.p1 GENE.R_Transcript_68962~~R_Transcript_68962.p1 ORF type:complete len:1018 (+),score=204.60,RCC1|PF00415.14|0.16,RCC1|PF00415.14|6.3e-11,RCC1|PF00415.14|5.6e-09,RCC1|PF00415.14|4.4e-12,RCC1|PF00415.14|1.3e-13,RCC1|PF00415.14|1.1e-08,RCC1|PF00415.14|7.6e-14,BRX|PF08381.7|1.7e-29,RCC1_2|PF13540.2|7.6e+03,RCC1_2|PF13540.2|0.0012,RCC1_2|PF13540.2|1.9e-06,RCC1_2|PF13540.2|0.0059,RCC1_2|PF13540.2|26,RCC1_2|PF13540.2|0.0005,RCC1_2|PF13540.2|7e-05,RCC1_2|PF13540.2|3e+02,BRX_N|PF13713.2|1.1e+04,BRX_N|PF13713.2|6e-18,FYVE|PF01363.17|1.5e-12,BRX_assoc|PF16627.1|2.6e-09 R_Transcript_68962:446-3055(+)
MGADTFRMSLSSAVSSSSQGSGHDDGDALGDVFIWGETTGDGILGGGVHRVGSCYGVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDADVSHPKLIDALSNTNIELVACGEHHTCAVTLSGELYTWGDGAFNFGLLGHGNYVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRRSVSVPREVESLKGLRTVRAACGVWHTAAVIEVMVGNSGSSNCSSGKLFTWGDGDKGRLGHGDKDSKLVPTCVAALVEPNFCQVACGHSITVALTTSGHVYTMGSPVYGQLGNPHTDGKLPVRVEGKLSRCFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTEDRITPTLVEALKDKQVRSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDCCLAKLKKAIETDASSFSLASRRGAVNQGFTDLNEREEKVEPASRGQLTRYSSMDSLTQLDSRSKKNKKYEFNSSRVSPVPNGGSQWGANISRSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLSGLMSPKLTVDDEKRTNEGLSQEVIRLRAQVESLTRKAQLQEIELEKTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKEMAERLPVGATRNSKSPPFPALMSTPTLGDVSASLDQFNDQIPGLLADSNGLNGVTLSNGSSTPSSNRSSVQRIVSSVSSDTIRNGNRTREGEPRTENEWVEQDEPGVYITFVSLPGGIKDLKRVRFSRKRFSEKQAEQWWAENRARVYDQYNVRTADKSSVGVGSEDIAH*

Click here to download the sequence:
Link to NCBI Protein BLAST