Transcript Information: R_Transcript_69245.p1


Annotated TAIR IDAT5G14170.1
Annotated Gene NameSWIB/MDM2 domain superfamily protein
Annotated Gene Symbol(s)CHC1
Annotation TypeHomolog
Chromosome Positionchr5:4568696-4570444 | Reverse length=534
E-Value1E-147
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.13494612096
Replicate 210.905406035189
Replicate 313.428087556365
Condition 2: 8 Hour
Replicate 113.351128947528
Replicate 216.867044492274
Replicate 320.22496269556
Condition 3: 24 Hour
Replicate 117.515223617688
Replicate 215.875983770372
Replicate 320.755582030679


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_69245.p1 GENE.R_Transcript_69245~~R_Transcript_69245.p1 ORF type:complete len:464 (+),score=100.78,SWIB|PF02201.14|1.3e-21 R_Transcript_69245:485-1876(+)
ATGTCAGACCCTCAACCTCAGTCCAATAGCAATGCCAATATCAATACCAATGTCCGTGTTACAAATTCCACCCAAGCTACCACTACAACTACTAGTACTACTGCCCCAATTACAGCCCCATCAAGCTCCAAAAAATCCCACCACAAATCATCCAGTAAACCCCAAGGTGGTGGGTCCGGTGGGGCAAGTACTGGTGGCACACCATTGAAGACAATGGAGCTTGCCCCATCTGCCCGTAGGCGAAAAAGAAAAGACCCAGATCACCAAATCCCTGAAAAAGTAGCTGCCCTTTTGCCTGAAAGTGTTCTTTATACTAAGCTACTTGAGTTAGAATCCCAAGTTGATACTGTCATTGCTAGGAAGAAATTGGATATTCAGGAATCTGTTAAGAAGCCTCCCCATGTTCAGAAAACCCTAAGGATTTACGTTTTCAACACTTTTTCGGGTGGTGAAAGTGAAACACCCAATTGGACACTTAAGATAATTGGCAAGGTTTTGGAAGATGGGTCTGGTTCTGGTTCTGATAATTTGGTGGATCGGAATGATTGTTACCCGAAGTTCTCATCGTTTTTTAAGAAGATAACTATATACTTGGACCATACATTATACCCTGATAACCATGTCATTTTGTGGGAGAAGTCTCGGTCCCCTGCCCTTCATGAAGGGTTTGAGGTGAAAAGAAAGGGGGATAAGGAGTTTACGGCGATTATAAGGCTTGAAATGAATAATGTTCCTGAGAAGTTTAAGCTGTCACCTGCTCTTATGCAAGCTCTTGGACTTGAGGTCGAGACGCGTGCTAGGGTGGTTACTGCGTTGTGGCATTATGTGAAGGTTAAGAAGTTGCAAGACCCGAATGACCCTTCTGCGTTTACATGTGACCAAGCGCTCAAGAAAGTGTTTGGAGAAGATAAAGTTAAGTTCACTGCAGCATCTCAGAAGCTGGCACAACATTTGTCTCCCTTGCAGCCCATACATTTGGAGCATAGGGTTAAGCTTTCAGGAAACAGTCCCGGTGGACATATGTGTTATGATGTTCTAGTTGATGTGCCCTTTCCTTTAGAGAAGGAAATGTCTGCTTTCTTGGCAAGTGTAGACAAATGCAAGGAAATTGATGATTACGATAATGCTATTGCTAGTGCTATAAAGAAGATCAATGAGCATCGACGAAGACGGGCCTTTTTCCTTGGATTTAGTCAGTCTCCTGCAGAGTTCATCAACACATTGATTACTTCCCAGGATAGAGATTTAAAGGTTGTTGCTGGCGATGCTATTCATAATGCTGAGAAAGAGCGTCGAGCTGACTTTTTCAACCAATCTTGGGTTGAAGATGCTGTCGTGCACTATCTAAATCGCAAAACTGGCAGTGGAGGGGATCCTGTTGGGCCTTCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_69245.p1 GENE.R_Transcript_69245~~R_Transcript_69245.p1 ORF type:complete len:464 (+),score=100.78,SWIB|PF02201.14|1.3e-21 R_Transcript_69245:485-1876(+)
MSDPQPQSNSNANINTNVRVTNSTQATTTTTSTTAPITAPSSSKKSHHKSSSKPQGGGSGGASTGGTPLKTMELAPSARRRKRKDPDHQIPEKVAALLPESVLYTKLLELESQVDTVIARKKLDIQESVKKPPHVQKTLRIYVFNTFSGGESETPNWTLKIIGKVLEDGSGSGSDNLVDRNDCYPKFSSFFKKITIYLDHTLYPDNHVILWEKSRSPALHEGFEVKRKGDKEFTAIIRLEMNNVPEKFKLSPALMQALGLEVETRARVVTALWHYVKVKKLQDPNDPSAFTCDQALKKVFGEDKVKFTAASQKLAQHLSPLQPIHLEHRVKLSGNSPGGHMCYDVLVDVPFPLEKEMSAFLASVDKCKEIDDYDNAIASAIKKINEHRRRRAFFLGFSQSPAEFINTLITSQDRDLKVVAGDAIHNAEKERRADFFNQSWVEDAVVHYLNRKTGSGGDPVGPS*

Click here to download the sequence:
Link to NCBI Protein BLAST