Transcript Information: R_Transcript_6930.p1


Annotated TAIR IDAT3G11130.1
Annotated Gene NameClathrin, heavy chain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3482575-3491667 | Reverse length=1705
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 143.954583376322
Replicate 228.814594950704
Replicate 335.80854179258
Condition 2: 8 Hour
Replicate 126.6075909497
Replicate 225.529109830393
Replicate 340.075950614449
Condition 3: 24 Hour
Replicate 145.673670351135
Replicate 244.472079402312
Replicate 340.84081664938


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_6930.p1 GENE.R_Transcript_6930~~R_Transcript_6930.p1 ORF type:complete len:1708 (+),score=389.46,Clathrin|PF00637.16|3.5e+03,Clathrin|PF00637.16|2.1e-21,Clathrin|PF00637.16|1.6e-20,Clathrin|PF00637.16|2.8e-28,Clathrin|PF00637.16|8.1e-32,Clathrin|PF00637.16|7.4e-29,Clathrin|PF00637.16|4.7e-30,Clathrin|PF00637.16|1.3e-28,Clathrin_propel|PF01394.16|4e-06,Clathrin_propel|PF01394.16|0.049,Clathrin_propel|PF01394.16|2.6e-10,Clathrin_propel|PF01394.16|0.00019,Clathrin_propel|PF01394.16|1.5,Clathrin_propel|PF01394.16|0.95,Clathrin_H_link|PF13838.2|4.1e-30,Clathrin-link|PF09268.6|1.9e-09,Clathrin-link|PF09268.6|2.1e+03 R_Transcript_6930:326-5449(+)
ATGGCTGCCGCTAACGCTCCCATCGTCATGAAGGAAGCCCTAACGCTACCGAGCATAGGGATCAATCCTCAGTTCATTACATTCACTCATGTGACAATGGAATCAGACAAGTACATTTGTGTCAGGGAGACCTCCCCGCAGAATAGTGTCGTTATTATTGATATGAACATGCCTATGCAACCTTTGAGACGACCTATCACCGCTGATTCCGCTTTGATGAATCCCAACACCAGAATTCTCGCTCTTAAAGCTCAACTTCCGGGAACTACTCAGGATCACCTTCAAATATTCAATATCGAAGCAAAAGCAAAAATAAAGTCCCATCAAATGCCAGAGCTGGTTGTCTTCTGGAAATGGATTACCCCTAAGATGTTAGGTCTTGTAACACAGACTGCAGTTTACCACTGGTCAATTGAAGGTGATTCTGAGCCTGTCAAAATGTTTGACCGGACGGCAAATCTTGCAAACAACCAAATAATCAACTACCGTTGTGATCCTGCAGAGAAATGGCTGGTTCTGATTGGAATTGCTCCTGGCACTCCTGAGAGGCCACAACTGGTTAAGGGAAATATGCAGCTGTTTTCTGTGGATCAACAGCGGAGTCAAGCTCTTGAGGCTCATGCTGCTTCATTTGCTCAATTTAAGGTTCCTGGGAATGAAAATCCTTCGACGCTTATCTGCTTTGCCACCAAGACATCCAATGCAGGACAAGTTACTTCAAAGTTACATGTTATTGAACTGGGTGCCCAGCCAGGAAAACCCGGATTTTCTAAGAAACAAGCCGATCTCTTTTTCCCTCCTGACTTTGCGGACGACTTTCCTGTGTCGATGCAGATATCTCAGAATTATGGTTTGATATTTGTCATCACCAAGCTTGGGCTCCTTTTTGTATATGACTTGGAGACTGCTAGTGCAGTTTACAGAAACCGCATCAGTCCAGATCCGATCTTCTTGACATCAGAGGCATCTTCAGTTGGTGGGTTTTATGCTGTCAACAGGCGAGGTCAGGTCCTTCTAGCCACTGTAAATGAAGCAACTATTGTGCCATTTGTCAGTGGACAGCTGAACAATCTAGAGCTTGCAGTTAATCTTGCCAAGCGAGGAAACCTTCCTGGTGCTGAAAACCTGGTTGTCCAGCGGTTCCAGGAGTTGTTTGCTCAGACCAAGTATAAGGAGGCAGCCGAGCTTGCTGCGGAATCTCCGCAGGGTATTTTGCGTACCCCTGATACTGTTGCCAAGTTCCAGAGTGTTCCTGTGCAAGCTGGGCAAACACCACCATTGTTGCAATACTTTGGAACTTTGTTAACCAGAGGAAAGCTCAATGCCTTTGAGTCACTCGAATTGTCTAGATTAGTTGTGAATCAAAACAAAAAGAATCTCTTAGAGAATTGGTTGGCTGAGGACAAGCTTGAATGTAGTGAGGAGCTTGGAGATCTTGTGAAGACTGTTGATAATGACCTTGCTCTCAAAATATACATCAAGGCTAGGGCAACTCCCAAGGTTGTTGCTGCTTTTGCTGAGAGGAGGGAATTTGATAAGATTCTCATATACTCAAAGCAGGTCGGATACACCCCTGATTACTTGTTCCTTCTTCAAACGATTTTGCGCTCCGACCCACAGGGTGCTGTTAACTTTGCTTTGATGATGTCTCAAATGGAGGGAGGATGTCCTATTGACTACAATACTATCACTGATCTGTTCCTTCAGAGGAATATGATTCGTGAGGCAACAGCATTTTTGTTGGATGTCCTGAAGCCCAATTTACCAGAACATGGGTACCTCCAAACAAAGGTGTTGGAAATTAATCTTGTGACATTTCCAAATGTTGCTGATGCCATCTTAGCTAATGGCATGTTCAGCCATTATGATCGCCCTCGAATTGCACAATTATGTGAAAAAGGTGGCCTTTATTTGCAAGCTCTCAAGCATTATACCGAGTTGCCTGATATAAAGCGTGTCATTGTTAACACACATGCCATTGAGCCACAGGCACTTGTTGAGTTCTTTGGAACTCTTTCTAAAGAATGGGCTTTGGAATGCATGAAAGATCTTTTACTTGTCAATCTCAGAGGCAATCTCCAGATAATTGTCCAGGTTGCCAAAGAATATTGTGAGCAGTTGGGTACAGATGCCTGTGTAAAACTTTTTGAGCAATTCAAGTCTTACGAAGGATTATATTTCTTCTTGGGTTCATATTTGAGCTCCAGTGAGGATCCAGAAATTCACTTCAAGTACATTGAAGCGGCAGCTAAAACTGGGCAAATTAAGGAAGTAGAACGTGTAACTAGAGAGTCGAACTTTTATGATCCTGAGAAAACGAAAAATTTCTTGATGGAAGCCAAGCTTCCTGATGCTAGGCCTCTGATAAATGTGTGTGACCGTTTCGGGTTTGTACCGGATCTGACTCACTACCTCTACAAGAGCAACATGCTTCGTTACATTGAAGGTTATGTGCAGAAGGTCAACCCTAGCAATGCCCCTCTAGTCGTAGGGCAACTGCTGGATGATGAATGTCCTGAAGACTTTATTAAAGGTCTCATTCTCTCTGTACGTTCACTCCTTCCTGTGGAGCCCCTTGTGGAGGAATGTGAGAAAAGGAATCGTCTGCGCCTGCTTACTCAGTTTTTGGAACACCTTGTCAGTGAGGGAAGTACTGATGTACATGTGCACAATGCTCTGGGTAAAATTATAATTGACAGCAATAACAACCCAGAGCATTTTCTCACTACCAATCCATACTATGACTCCCGTGTTGTGGGTAAATATTGTGAGAAAAGGGATCCTACTCTTGCTGTTGTTGCTTATCGACGTGGACAGTGTGATGATGAGCTCATTAATGTCACAAATAAGAACTCTCTCTTTAAACTGCAAGCCAGGTATGTTGTGGAAAGAATGGATGGTGATCTATGGGAGAAAGTTCTCAGTCCAGACAATGAATACAAAAGGCAAGTAATAGATCAAGTTGTCTCAACTGCGTTGCCAGAAAGCAAGAGCCCAGAGCAAGTTTCTGCAGCTGTTAAGGCCTTTATGACTGCTGATCTTCCCCACGAGCTGATTGAGCTTCTTGAAAAGATTGTTCTACAGAACTCAGCATTTAGTGGGAACTCCAATCTGCAAAACCTGCTTATCTTGACTGCTATCAAAGCAGATTCATCTCGAGTTATGGATTATGTCAACAGGCTTGATAATTTTGATGGACCTGCAGTTGGAGAAGTAGCAGTTGAGGCTCAACTCTATGAAGAAGCATTTGCAATTTTCAAGAAATTCAATTTGAATGTGCAAGCTGTTAATGTGCTTTTAGATCATATTCAAAGCATTGATCGGGCTGTTGAGTTTGCATTCCGTGTTGAAGAAGATGCTGTTTGGAGCCAAGTCGCAAAGGCTCAGTTGAGGGCAGGACTTGTCAGTGATGCAATTGAGTCCTTCATACGTGCTGAAGACGCCTCTCAATTTTTGGAGGTGATTCGTGCTGCTGAGGATGCAAACGTCTACCATGACTTGGTGAAGTATCTTATTATGGTTAGACAACAAACAAAGGAGCCCAGGGTGGATAGTGAGCTCATTTATGCTTATGCCAAGACTGATAGGTTGACTGAAATTGAGGAATTCATCCTAATGCCAAATGTTGCCAACCTTCAAAATGTGGGTGACCGTTTGTTTGACGAAGCTTTATATGAAGCTGCAAAGATAATATATGCTTTCATTTCTAACTGGGCCAAGCTAGCTGTTACGTTAGTGAAGCTAAAGCAATTTCAAAGTGCTGTTGATGCAGCACGGAAAGCCAACAGTGCAAAGACTTGGAAGGAAGTGTGCTTTGCATGTGTTGATGCTGAAGAGTTCAGATTAGCTCAGATTTGTGGGCTGAATGTTATTATACAGGTGGATGATATGGAGGAGGTCAGCCAGTATTACCAAGACAGGGGCTGCTTTAATGAGATAATCTCATTGATGGAAAGTGGTTTGGGATTGGAACGTGCACACATGGGCATTTTTACTGAACTAGGAGTACTATACGCCAGATATCGATATGAGAAGCTCATGGAGCACATTAAGTTGTTTTCAACCCGGCTCAACATTCCCAAGCTTATCAGAGCATGCGATGAGCAGCAGCACTGGAAAGAACTCACTTATCTTTATATCCAGTACGATGAATTTGATAATGCTGCCAGTACTGTAATGAATCACTCTCCTGAGGCCTGGGATCATATGCAGTTCAAAGATATTGTGGTTAAAGTTGCGAATGTGGAGCTCTACTATAAAGCTGTGCACTTTTACCTTCAGGAGCATCCTGATCTTATAAATGATATGCTTAATGTGCTGGCTCTTCGTCTAGACCATACACGTGTAGTTGACATAATGCAAAAGGCGGGTAGTCTGCTTCTTATCAAACCATATATGATAGCTGTCCAGAGCAATAACGTCTCTGCTGTAAATGAGGCTTTGAATGAAATATATGTAGAGGAGGAAGACTATGAAAGATTGCGAGAGTCAATTGATTTGCATGATAATTTTGATCAAATTGGACTTGCACAAAAGATTGAGAAACATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATCTACAAGAAGGCAGGTAGATGGAAGCAGTCTATTGCATTGTCGAAAAAAGACAAACATTACAAGGATGCAATGGAAACGTGCTCTCAATCTGGTGATCGTGAGTTGGCAGAAGAGTTGCTGGTCTATTTCATTGAAGAGGGGAAGGAGTGCTTTGCTGCATGCCTTTTTGTTTGTTATGATGTAATCCGGCCCGATGTTGCCCTTGAACTTTCCTGGATGAATAATATGATAGACTTTGCATTCCCATACTTACTCCAGTTTATCCGAGAGTACACAGGCAAAGTAGATGAGCTTATTAAGGATAAAATTGAAGCCCAGAATGAAGCAAAGGCTAAAGAGCAGGAGGAGAAGAACGTGATTGCTCAACAGAATATGCATGCACAGTTGCTACCGCTTGCGTTACCAGCACCACCAATGCCGGGAGCAGGACCTCCTCCCGGAATGGGAGGTTTTGCACCTCCACCCCCGATAGGAGGAATGGGGGGAATGGGGATGCCCCCTATGCCTCCTTTTGGCATGCCACCAATGGGAGGCTACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_6930.p1 GENE.R_Transcript_6930~~R_Transcript_6930.p1 ORF type:complete len:1708 (+),score=389.46,Clathrin|PF00637.16|3.5e+03,Clathrin|PF00637.16|2.1e-21,Clathrin|PF00637.16|1.6e-20,Clathrin|PF00637.16|2.8e-28,Clathrin|PF00637.16|8.1e-32,Clathrin|PF00637.16|7.4e-29,Clathrin|PF00637.16|4.7e-30,Clathrin|PF00637.16|1.3e-28,Clathrin_propel|PF01394.16|4e-06,Clathrin_propel|PF01394.16|0.049,Clathrin_propel|PF01394.16|2.6e-10,Clathrin_propel|PF01394.16|0.00019,Clathrin_propel|PF01394.16|1.5,Clathrin_propel|PF01394.16|0.95,Clathrin_H_link|PF13838.2|4.1e-30,Clathrin-link|PF09268.6|1.9e-09,Clathrin-link|PF09268.6|2.1e+03 R_Transcript_6930:326-5449(+)
MAAANAPIVMKEALTLPSIGINPQFITFTHVTMESDKYICVRETSPQNSVVIIDMNMPMQPLRRPITADSALMNPNTRILALKAQLPGTTQDHLQIFNIEAKAKIKSHQMPELVVFWKWITPKMLGLVTQTAVYHWSIEGDSEPVKMFDRTANLANNQIINYRCDPAEKWLVLIGIAPGTPERPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSTLICFATKTSNAGQVTSKLHVIELGAQPGKPGFSKKQADLFFPPDFADDFPVSMQISQNYGLIFVITKLGLLFVYDLETASAVYRNRISPDPIFLTSEASSVGGFYAVNRRGQVLLATVNEATIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERREFDKILIYSKQVGYTPDYLFLLQTILRSDPQGAVNFALMMSQMEGGCPIDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHGYLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKGGLYLQALKHYTELPDIKRVIVNTHAIEPQALVEFFGTLSKEWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGTDACVKLFEQFKSYEGLYFFLGSYLSSSEDPEIHFKYIEAAAKTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYKSNMLRYIEGYVQKVNPSNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSTDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDGDLWEKVLSPDNEYKRQVIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNSNLQNLLILTAIKADSSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLLDHIQSIDRAVEFAFRVEEDAVWSQVAKAQLRAGLVSDAIESFIRAEDASQFLEVIRAAEDANVYHDLVKYLIMVRQQTKEPRVDSELIYAYAKTDRLTEIEEFILMPNVANLQNVGDRLFDEALYEAAKIIYAFISNWAKLAVTLVKLKQFQSAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNVIIQVDDMEEVSQYYQDRGCFNEIISLMESGLGLERAHMGIFTELGVLYARYRYEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAASTVMNHSPEAWDHMQFKDIVVKVANVELYYKAVHFYLQEHPDLINDMLNVLALRLDHTRVVDIMQKAGSLLLIKPYMIAVQSNNVSAVNEALNEIYVEEEDYERLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDKHYKDAMETCSQSGDRELAEELLVYFIEEGKECFAACLFVCYDVIRPDVALELSWMNNMIDFAFPYLLQFIREYTGKVDELIKDKIEAQNEAKAKEQEEKNVIAQQNMHAQLLPLALPAPPMPGAGPPPGMGGFAPPPPIGGMGGMGMPPMPPFGMPPMGGY*

Click here to download the sequence:
Link to NCBI Protein BLAST