Transcript Information: R_Transcript_69415.p1


Annotated TAIR IDAT3G25680.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins in 355 species: Archae - 39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:9349693-9352258 | Forward length=558
E-Value3.5E-149
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 116.495688316221
Replicate 215.551607606482
Replicate 314.97474616146
Condition 2: 8 Hour
Replicate 113.801815179891
Replicate 217.569264303789
Replicate 319.194482659136
Condition 3: 24 Hour
Replicate 115.649809585345
Replicate 213.39069289785
Replicate 314.818383918458


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_69415.p1 GENE.R_Transcript_69415~~R_Transcript_69415.p1 ORF type:5prime_partial len:644 (+),score=164.42 R_Transcript_69415:1-1932(+)
TTTTCCTTCTTTGAGAGAACCTTTTTGTCAAGTTTCTACGCTCTCTACTCTGTGCTGTGTTCAAAGTTCCAACCTTCCTCCTCCCCACCACCACCACCACCTGAATCGCCTTCTTCCTTCCCTTTCTCTCTCCTAAACCACCGTAACCCTAAAACCCTAAACCCCCAAATGTGTACTTCATCATCATCTTCTTCATACTCTTCCTCTTTCTCTCTCCTCACCAATCGCCTCCCTCTCTCTCTTCATCGCCATCCCCCTCACCATCACACCTTCCTCACCAATTCCCCTTTCTATCTCCTATCCCGTCATTCTCTGAAACTCTCCTCTCTGAATTCTTCTTCTTCCACCTCCATTTCCAACAACAACGCCACCCTCGATCATCTCTCCTGGTCTTCTCTCAACGATGACGATGATCCCAATACCAGCAATTTCGCCGGTTGGGATTCTTCATCTCCCCTAACCCCCTCCCCCATTAAACAATCAGGTTTTCCGAAGTTGCTGGTCGCTGGTATTGCCACGTCAGCCGCTCTTCTGGTCGCTGTGATTTCTTACTTCTCACTCTATAAAAACGGGTTCAGAGAGTCGATTAGAAGCTCAATTTCGGGTTCGTCGAACCAGCAAGTGACAGAAACTGAAGCACCTGCTGAATCTGATAAACATCAAACTAAGGAGGAGGGAAATGGAAATGGAATTGAAGGTGATGTGAGTGTCGACATCGAATTGAGTGATCCAGTTACTGAGACTCCTACTGCTTCTGAGAAGAATGTGCCTCGTGTCGTCACAGCTACAGTGGATTCCAATCAACAAGAAGCTGTGAATGTGCTGAAGAAATTGAAGATTGTAGAGGAAGATGTTAAGGCTGGTGAGCTCTGTAGCCGGAGAGAATATGCAAGGTGGTTAGTTCGAGCAAGTTCGTTGTTGGAAAGGAACCCAAAACATAGGTTAACTCCTGCAGTTGCCCTCTCTGGATATTTCATCCCTGCATATGAGGATGTGACTACTGGAGACCAAGATTTTGACTCCATTCAAGCATTGGCAGAAGCTGGTGTTGTGTTGAGTAAACTATCACAAAAGTACTATTTACATGAAGGAGGCACAGATTTTTCTCCTGAAAGATTTATATCGCGGCGTGATCTCATAGATTGGAGAGCTCAGCTGGAGTATGATTTTTCCATGACAGGAAATCAAGAGATACTGAAAACAAAATTGGACCTTTTGGATGTGAGGGAGATAAACTCAGATAATTGGCCAGGACTTCTCATGGACATGTTTGCTGGAGACAAAAGCCTTCTTATAAGAGTTTTCGGACAAATTAGGCGTCTTCAACCAAATAAACCCTCAACTGTAGCAGAAGCAGCTGTGGCACTCGGAAGTGGGCGGATGACAGAGGCAATTAATAATGAATTATTAAGAATACAATCTGAAGAATCTTGCAGGCAAGATGCTAAAGAAGAAATAAAACGTGAGCTGCTTGATCGAGGGGAGATACAGAAGTATTGGGCTGAAAAGATTGAAGTGGAGAGAGCCCATGGTTTAGAGGTGGAGCAATATTACATAGAAGTCATCAATGAATTGGAACAGGAGAAGGCTGTTCAGGAAGGTGTTTTCAATGGGTTTTTAAAGGAGAAAGCAGCTATGGACTGCCAAAAGCAACTTCTAAATGGTTTGAAGGAGGATGTGAGTGAAATGTCTGAGAAGGTTGCATCAGAGAGGGCTCAACAAATTGCTGAGGAGGAAGCTGCACAAACTCTTCGCTTTGATTTGCAAGTGGAGAAGGAAGGTATACTTGATGCTAAATCATTGCTCGAGGCTGAGATTGAAGCTCTTCGAATTTTGAGATCGTGGATTGAGGATGAAGCAAGGAAAAGCCAAGCTCGTTGGAGGGTTCTTGAAGAGGTAAGGCGACGATGGAAATGGGATAGTCTTGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_69415.p1 GENE.R_Transcript_69415~~R_Transcript_69415.p1 ORF type:5prime_partial len:644 (+),score=164.42 R_Transcript_69415:1-1932(+)
FSFFERTFLSSFYALYSVLCSKFQPSSSPPPPPPESPSSFPFSLLNHRNPKTLNPQMCTSSSSSSYSSSFSLLTNRLPLSLHRHPPHHHTFLTNSPFYLLSRHSLKLSSLNSSSSTSISNNNATLDHLSWSSLNDDDDPNTSNFAGWDSSSPLTPSPIKQSGFPKLLVAGIATSAALLVAVISYFSLYKNGFRESIRSSISGSSNQQVTETEAPAESDKHQTKEEGNGNGIEGDVSVDIELSDPVTETPTASEKNVPRVVTATVDSNQQEAVNVLKKLKIVEEDVKAGELCSRREYARWLVRASSLLERNPKHRLTPAVALSGYFIPAYEDVTTGDQDFDSIQALAEAGVVLSKLSQKYYLHEGGTDFSPERFISRRDLIDWRAQLEYDFSMTGNQEILKTKLDLLDVREINSDNWPGLLMDMFAGDKSLLIRVFGQIRRLQPNKPSTVAEAAVALGSGRMTEAINNELLRIQSEESCRQDAKEEIKRELLDRGEIQKYWAEKIEVERAHGLEVEQYYIEVINELEQEKAVQEGVFNGFLKEKAAMDCQKQLLNGLKEDVSEMSEKVASERAQQIAEEEAAQTLRFDLQVEKEGILDAKSLLEAEIEALRILRSWIEDEARKSQARWRVLEEVRRRWKWDSLE*

Click here to download the sequence:
Link to NCBI Protein BLAST