Transcript Information: R_Transcript_69536.p1


Annotated TAIR IDAT3G22270.1
Annotated Gene NameTopoisomerase II-associated protein PAT1
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:7874480-7877857 | Forward length=782
E-Value6.3E-226
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.840611900991
Replicate 211.680700461481
Replicate 317.825127991489
Condition 2: 8 Hour
Replicate 118.153313667785
Replicate 223.543181340835
Replicate 326.977048887541
Condition 3: 24 Hour
Replicate 123.116136932723
Replicate 218.556838514831
Replicate 323.296568436859


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_69536.p1 GENE.R_Transcript_69536~~R_Transcript_69536.p1 ORF type:complete len:870 (+),score=193.89 R_Transcript_69536:269-2878(+)
ATGATGGGAGGTAGAAGTGAGCTCTGCATGGCTCAATTGGATAACAATGAAGATATCAGCTTCAATCGCCGAGATTTCGATCCAAATGGAAACCCTAGATATCTTGGCCCTCAGAATTTCTCCCAACCCAAGCAGGTCCCAACCCGATCAAGGAAGCCTGGAGCTATTGGTGATACAGTTTCTGGATCCTTTTCTACCGAAAGTAATTCACTTTTTGATGCATCCCAGTATGCATTCTTTGGTCAAAGTGCTGTTGAGGAGGTTGAGTTGGGTGGCTTAGAGGATGATGATAATGACAATCCTCTGCAAAGCGATGAATATCATTTGTTCAATAAAGATGAGGAGCACGACATGGCTTTAGGGTCGTTATCTGAGGTGGATGATCTGGCAACCACATTCTCAAAGTTGAACAGAGTTGTGACAGGACCAAGGAATCCAGGGGTTATTGGTGACCGAGGGTCTGGATCTTTGTCAAGAGAAAGCTCATCTGTTGCAGATTGGTCACGGGATGGCTGGTCAGACCAGAATGTGTTGGATGTGGAGAATTCTCTGGAAAGTAGGTGGTCATCTCACCCTCATTGCTCGTCCAGTCATCCTGTGGAATATAAACCATTGTACAGAGCATTGTCTTACCCAGAACAGCATCTACAACAGCAACATATTCAGCAACACTTCTCAAGTGAAACCCTGTCATCTCCAAAATCGTCTTTCACATCTTTTCCTCCTCCTGGTGGCAGACCGCAGCAGCCTTTGTCTCACCGTCATTCACTTCCTCTGAACATTTCTTCTCTGAACTCCGGTCCTGATTTAGCTTTTTCAGCACCAAATATGTCACCGATGTCTGACTCTGGTCTTCATTTTGCTGGTTTACCCTTGGCTCATGGATTACGTTATGGAGGAAGCATGTCAGGCCTAACACCCAGTCACGGAGTCGGTAATCAGCCACGAAATCAGTGGAGCAACCATGCTGGTTTGTTGCATGGGGACCATTCAATGATTCTGAACAATGTATTACAACAGCAATTGACTCACCAAAATGGTTTAGTCTCGTCCTCACCACTAATGTCACCACGGCAACAGTTGCAACAACAGGGATTGCATCAGCAGTTATCATCACTGGCACATATCTCATTTTTGCAGTCCCAGATGATTGGTGGTCATCCATCACCACCCTCGCATGTTTTGAGAAAATATGACACAATGTATGGTATCGGTGAGGTGAGGGAACAAAGACCGAAATCAATCCGAGGTAAGCAGAATCACCGTTTTAGTCAGCAAGGATCTGATTCTGCTGGCCAGAGGAGTGATAGTACGCAGTTCAGATCAAAGTATATGACTGCTGAAGAGATAGACGGTATTCTGAAGATGCAACATACTACTCACAGCAATGACCCTTATATAGATGATTACTACCACCAAGCCTGTGCTGCAAAAAAATCCTCTGGATCACGGCTGAAACACCACTTTGCTCCTTTGCACCTCCGTGATCTGCCTACTCGTGTACGTAACATTAGCTCAGATCAGCATGGTCATCAATCATTGGATTCTTTAAGAAGGCTTGCCTTGTCATCCATCCGGAGACCTCGGCCTCTTCTTGAAATTGAATCTTCTTCCTCAGGATGCAGTGATGGCTGTGCAGAACGTAGATCATTGGAACAGGAACCAATGTTTGCTGCTCGAATTGCTGTTGAGGATGGTCTTGCTCTTCTTCTTGATGTAGATGATATTGACCGTTTTCTGCAATTTAGCCCCCCACCAGATGGTGGTTCTCAGCTGAGGCGGAAACGATTGGTTCTGCTCGAGGCTTTGGCAGCTGCCTTCCAGCTTGTTGATCCTCTTGGGAGCGGGGGCCATACAGTTGGTCAGGGGGACGATGTCGTGTTCATGCGGCTTGTTTCCCTCCCAAAAGGTCGTAAACTTCTCTCCAAGTACCTTCAGCTGCTTACTATCAGCCCTGGGCCTGCAAGTGAGCTGGCTCGAGTTGTCTGCATGGCAGTTTTCCGCCATTTAAGGTTTCTGTTTGGTGGTCTTCCATCTGAACCTGGAGCAGTCGAGGCTACTGTAAGTCTTGCTAAGGGAGTTTGCATGTGTGTCAGTGGCATGGATATCCGTGGTCTTAGTGCTTCTCTTGCTGCCGTGGTTTGTTCTTCAGAGCAGCCGCCACTTCGCCCACTTGGAAGCCCTGCTGGGGACCATGCCTCTGTTGTCATAAAATCTGTACTTGAAAGAGCTACTGAACTGCTTACCAGTCCTAATCCTCAGGCTGCAGGCAGTTGTAATATATCCAATCGTAACTTCTGGAAGGCTTCATTTGGTACTTTCTTTACCCTACTTGCAAAGTACTGCGTAAGTAAATATGACACCATGATGCAGTCTATCTTAGATCAAGCACAATCAAATTCAGAAATTACAAGTTCAGAAGCAGCAAGGGCTGTCCGCAAGGAGATGCCAGTTGAGCTCCTTCGTGCCAGTCTTCCTCATACAGATGAACACCAACGCAGGATGTTGATGGATTTTGCTCACCAATCAATTCCATTTCCTGTCACTGGACTCAATCTTCATGAGGAGGAAAATAATGGCCTAATCACTTCAGAATCTGTCAGGATTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_69536.p1 GENE.R_Transcript_69536~~R_Transcript_69536.p1 ORF type:complete len:870 (+),score=193.89 R_Transcript_69536:269-2878(+)
MMGGRSELCMAQLDNNEDISFNRRDFDPNGNPRYLGPQNFSQPKQVPTRSRKPGAIGDTVSGSFSTESNSLFDASQYAFFGQSAVEEVELGGLEDDDNDNPLQSDEYHLFNKDEEHDMALGSLSEVDDLATTFSKLNRVVTGPRNPGVIGDRGSGSLSRESSSVADWSRDGWSDQNVLDVENSLESRWSSHPHCSSSHPVEYKPLYRALSYPEQHLQQQHIQQHFSSETLSSPKSSFTSFPPPGGRPQQPLSHRHSLPLNISSLNSGPDLAFSAPNMSPMSDSGLHFAGLPLAHGLRYGGSMSGLTPSHGVGNQPRNQWSNHAGLLHGDHSMILNNVLQQQLTHQNGLVSSSPLMSPRQQLQQQGLHQQLSSLAHISFLQSQMIGGHPSPPSHVLRKYDTMYGIGEVREQRPKSIRGKQNHRFSQQGSDSAGQRSDSTQFRSKYMTAEEIDGILKMQHTTHSNDPYIDDYYHQACAAKKSSGSRLKHHFAPLHLRDLPTRVRNISSDQHGHQSLDSLRRLALSSIRRPRPLLEIESSSSGCSDGCAERRSLEQEPMFAARIAVEDGLALLLDVDDIDRFLQFSPPPDGGSQLRRKRLVLLEALAAAFQLVDPLGSGGHTVGQGDDVVFMRLVSLPKGRKLLSKYLQLLTISPGPASELARVVCMAVFRHLRFLFGGLPSEPGAVEATVSLAKGVCMCVSGMDIRGLSASLAAVVCSSEQPPLRPLGSPAGDHASVVIKSVLERATELLTSPNPQAAGSCNISNRNFWKASFGTFFTLLAKYCVSKYDTMMQSILDQAQSNSEITSSEAARAVRKEMPVELLRASLPHTDEHQRRMLMDFAHQSIPFPVTGLNLHEEENNGLITSESVRI*

Click here to download the sequence:
Link to NCBI Protein BLAST