Transcript Information: R_Transcript_70102.p1


Annotated TAIR IDAT5G15540.1
Annotated Gene NamePHD finger family protein
Annotated Gene Symbol(s)EMB2773, ATSCC2, SCC2
Annotation TypeOrtholog
Chromosome Positionchr5:5047887-5057411 | Reverse length=1846
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.0584910376579
Replicate 22.3931774197128
Replicate 33.4469431082363
Condition 2: 8 Hour
Replicate 12.6534373581237
Replicate 22.862594643341
Replicate 34.6168891695875
Condition 3: 24 Hour
Replicate 14.653435378552
Replicate 23.4921858546563
Replicate 34.1415814034163


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_70102.p1 GENE.R_Transcript_70102~~R_Transcript_70102.p1 ORF type:complete len:1781 (+),score=341.71,Nipped-B_C|PF12830.3|2.5e+02,Nipped-B_C|PF12830.3|1.6e+03,Nipped-B_C|PF12830.3|4e+03,Nipped-B_C|PF12830.3|9.9e-50,Cohesin_HEAT|PF12765.3|9.4e+03,Cohesin_HEAT|PF12765.3|7.7e+03,Cohesin_HEAT|PF12765.3|3.2e-13,Cohesin_HEAT|PF12765.3|31,Cohesin_HEAT|PF12765.3|7.6e+03,Cohesin_HEAT|PF12765.3|1.1e+03,PHD|PF00628.25|5.1e-06 R_Transcript_70102:238-5580(+)
ATGAACAACAACAACAACCACAATCCGAACGATTGGACCCACAACAAAGGCATCACCCTTTCGAATACTTTACACTCTGAGGTTGCTCCTTGTTTTCCTTTACCTTCACTTCCACCGTTTTGTGGAGATTCCGATCAAGAGCTTCGTCTATTCGAGGACCAGCAAACTAGGCCTTTGAATCGCAATGATGTTCTTGCTCAGGCTAGCAAGATTGCTGATCTGCTACGTCATACCGACGTATCCTACTTGAATCTTAAAATTGAGGCCACTAAGAGCTGTGGTTCTTCTGTAGAGCCTATGTTCCTTTGTAATGAGGTTCTTCGTCACAATCCGGATGCCTTCGAGTGTACTCTTCCAGGTCCTCTGGAAGAGCGTATGTTTAGTGCAGAGACTGGTAGAAAGATTCATGAAATAAAACAACATTTTTCAAATCAAGTGCAAAGAGAGCAAGCGGAAAGCCAGAATTGTCAGCGTACTCATGTCCTTGATGATCTACCTTCGTCGTCTACAAAGCCCAGAGTCAAGAAGAAAGGAAGTCAGGGGGTGTCATGTGCTGTTGTTACAGATGCTGGTCAACATCAAGATGCTGTTGTTGCGCGATTCTGTGATGTTGTGGAGGACTTCTGTAGTAGGGCTGAAATTCCGGGTGAGGAGCGAGATGAAGCAGAGTGGTTACTGTTGCCAACTTCAGACATTAGAATTGTTGTGAATGAAATATTGTCAATCCGGGCAGAGAAACTGTTACCTCTGGTTCCTGTAGATCGTCTTGAGAAATTATTAAAGTTATTAGACCATCAAGTTCATCGTGCGGAAGGCCTGTCAATTGATGAATGTGAGCATTCTGATTCGGGTGCTTCATCGATTTTCTGTGCTTTGGAGGCAATACATGCTGCTTTGGCTGTATTGGCCTACAATGACATGTCTAAGCAACTTTATAAAGAAGAGATTATTGAAAGAATTCTTGAGTTTACCAGACGTCAGGTCATGGACATTATGTCAGCATGTGATCCTTCTTATCGTGCTTTGCATAGACCTGGTGATAATGGAGCTGCTGAAGGCGAAGATGACGCAGATGCTGATGTTGAATATGGTTCTGCCAGCAAAAAAAGGCGTACAAGTAAGAGTGTGAAAGTGAAAAGAACAATGGCAAACAGGGTTTCAGCTGCTGTCCACACCGCGTTCCAGAAGCTTTGCACTATTCTTGGTTTCTTGAAGGAGCTTTTGTTAATAGAGTTCCTCCCAGATAGCTGCATCTTGCAGCTGGTTAAAACTAGCTTGTCAACATTCTTGGTTGACAATATCCAACTATTGCAAATGAAGGCTATGGGCCTAATCAGTGGGATATTCTATTCATATACACAACATAGGAGTCATGTTATTGAGGAAGTAGTTCAACTACTCTGGAAGCTACCATTCTCCAAGCGAGCAGCCAGGTCATATCATTTACCTGATGAGGAACAGAAGCAGATCCAAATGATTACTGCATTGTTGCTTCAGTTAGTTCTTCATAGTGCTAATCTTCCTGAAATGTTGAGGCAAACCTCAAATAATAGTGCCATCTTTGAGACTGCAATTGAAACCAATTACCTGACTAAATGCAATGAGGCAGCCACAGAGACATGTGTTGCATTCTGGACGCATGTTCTTCAGCGGCTTACCAGTGTAAAGAGCCAGGATGCATCTGAGGTGAAGGTGATAATGGAGAATCTTGTACTGGATCTGTTAACCACATTAAATCTGCCGGAGTACCCTGCGTCTTCTCTTATTCTAGAAGTTCTTTGTGTTTTACTGCTCCAGAATGCTGGTCCTAAATCAAAAGATACATCTGTTCGCACAATGGCAATTGACATACTTGGTACAATTGCTGCAAGGTTGAAGCATGATTCTGTTATTTGCCAACTTGAGAACTTATGGATTGTGCAAGAGTTGGTAGGTAGGGAAAATTCTGATCGTAGTGTACTGAGGGATACATGTTCTGTTTGTTTGGATGGAGTGGTTGAGAAGGTTTTAGTGATATGTCAAGACTGTCAGAGATTATTCCATCCCAATTGTATGGGAGTCAGAGAACATGACATATCTACACGTGGTTGGCACTGTCCACTCTGTCTCTGTAAAAAACAACTTTTAGTCTTACAATCATACTGCAAGTCACAGTACAAGGATGACTGCAAAGCCAATCGCAGCATATCAGAGAAATCATGTGAATCTTCTGAGTCAGCTTCAACAATGGAGATAGTACAACAGATGCTTTTAAATTACCTGGAGGATACTGTCTCTTCTGATGACCTTCATCTTTTTGCTCGCTGGTTTTATCTCTCCCTATGGTACAAAGATGACCCAAAATCTCGACAACAGTTTTGCTACCGCCTTGCCAGATTGAAATCAAAAGCAGTTATCCGTGATTCAGGGGCCTTGTCATCTTCTTTGACCAGAGATTCTATTAAAAAGATAACTTTGTGTTTAGGACAGCATAGCTCCTTCTCCAGAGGATTTGATACAATTCTTGGAATGCTTCTGGTTAGCCTGAGGGAGAACTCACCTGTAATTAGGGCTAAGGCATTGCGTGCGGTTAGTATAATTGTAGAGGCTGACCCAGATGTTTTATGTGATAAACGGGTCCAATCAGCGGTGGAAGGAAGGTTCTGTGATTCTGCAATATCTGTCAGAGAAGCCGCCTTGGAATTGGTTGGAAGACATATTGCATCGCATCCAGATGTTGGGTTTCAGTACTTTGAAAAGGTAGCCGAGAGGATTAAGGATACTGGAGTAAGTGTTCGGAAACGAGCAATCAAAATTATCAGAGACATGTGCACATCAAATGCTGATTTCCCAGAATCTACCAATGCTTGCATTGAGATCATATCTCGTATCAGTGATGAAGAATCGAGTATTCAGGACCTTGTTTGCAAAACATTTTATGAGTTCTGGTTTGAAGAGCCATCAGGAAGACAATATTTTGGAGATGATAGTTCTGTGCCGCTGGAGGTGGCTAGAAAAACTGAACAGATAGTTGACATGTTGAGGAGGATGCCTAGCAATCAACCTCTAGTCACTGTCATTAAACGCAACTTGGCCCTTGATTTCTTGCCCCAGACAAAGATGATGGGGATCAATCCTGTATCGATGGCATCAGTGCGTAGGCGTTGTGAAATGATGTGCATGTTTTCAATGGAAAGGATTTTGCAGGTTGAGGAAATGAACCTCGAGGAAGGTGAGGTACGGATACTTCCATATGTGACAGTTTTGCATGCCTTTTGTCTTGTGGATCCATCACTTTGTGCGCCTGCTTCAAATCCTTCTCAGTTTGTGGTCACATTGCAGCCATATCTCAAGAATCAGGTTGATAATCGAGTTGTCGCACAACTATTAGAAAGTATCATCTTCATAATTGATGCTGTTCTTCCATTACTGCGGAAGCTGCCCCAAAGTGTTGTTGAAGAACTTGAGCAGGATCTGAAGCAGATGATTGTCCGGCATTCCTTTTTGACAGTTGTACATGCGTGCATCAGATGCCTCTGCTCTTTGAGTAAGATTGCTGGAAAAGGAGCAAGGTTAATTCAATTCCTCATTCAGGTGTTCATTAAACATTTAGATGCTCTCGACGTTGATAACAAACAGCAAGTGGGCCGTTCTTTGTTTTGTCTTGGCCTTCTTATCCGTTATGGTAATGGTCTATTGAGCTCTTTCACCGGGGGTGTGGATATTGCTGGCAGTCTCAGTTTGTTCAAGAAGTATCTCCTTGCAGATGATTTTGTTATAAAGGTCCGAGCACTGCAGGCATTGGGCTTTTTTTTAATTGCGAGACCTGAGTGTATGCTGGAGAAGGATGTTGGAAAGATTCTCACAAGCACATTGTCTTCTGGTTGTGATGCTCGTCTCAAGTTGCAAGCTTTGCAAAATTTGTACGACTATCTCCTTGATGCTGAAAGCCAGTTAGGATCAGACAAAGTTGAAGATAATATAATCGATTGCTCTGGAGATGGGGGGTCTGCGGTGCCCGTTGCTGCAGGTGCCGGTGACACTAACATTTGTGGAGGAATAGTGCAGCTGTATTGGGATCGTATTTCGGAGAGAAGCTTAGACACAAATGACCAAGTTCGGCAATCTAGCCTGAAGATTGTAGAAGTTGCACTGCGCCAAGGCCTTGTTCACCCTATAACTTGCGTCCCATATCTCATTGCACTTGAAACAGATCCACTGGAGGCAAATTCGAAGTTAGCTCATCATCTGCTGATGAATATGAATGAGAAATATCCAGCCTTCTTTGAGAGCCGCCTGGGTGATGGTCTCCAGCTGTCATTTAACTTCATAAACTCAATGAGTGAGAATTCTGCAAATATGAACCCTAAGCTGCACTACAGGGGTGCTGAAAATGTGAAGGGAAAGACTGAGGATGCATCATTTGCAAATGCAAGGCTAGGGGTATCTCGGATCTACAAGCTCATACGTGCAAACCGTGTTGCAAGAAATAAATTTATGTCATCTGTTGTTCGAAAATATGATAATCCTAGCTGGAGTGAAACAGTTGTTCCTTTCTTAATGTATTGCACAGATATTCTCGCGTTGCTCCCTTTCACAACACCTGATGAACCTCTGTACTTAGTTTATACTATAAATCGAGTAATACAAGTTAGATCTGGGACATTGGAAGCAAGCTTAAAAGCTTTTAGTCATCATTTTTCACAACGAAGCTCCCAGAAGGTTCATATGGAAAACGGTGGGAGTACTTGGCAGGAGTTAGCAGCTAACTCTATTGCTGCTTCTGCTATATCCTTAGAGTTAAATGGTGAAGTTCAGGAGCCAGCAGATGGGTACATATCTGGCACTACAATGCAGCATGGAAATCCTAGCACAAGCAGCTCGGGCCCTCGTTTGCTCACTGAAGAGGATCTGCAAAGAATACAGGCTGTCTGTCTTGCTGCCACTGCTCTTCAGCTCCTCTTAAAGCTGAAGAGGCACTTGAAGGTTGTGTACAATTTAGATGATGTCCGATGCCAAGCGTTTTCTCCTACTGAACCCCCAAAATCTGGTGAGGTCCTTTCAAAGCAGAATGTGCCTTTTAGTGTGGGTAACATACATTCCAATTTGCCCTCCACTTCTGAAGAGTTAACCCAGAGATATCAGGAATTCAAAAATGCGCTTAGAGAAGATACTGTTGATTATTCAACCTATACAGCGAATATTAAAAGGAAGCGTCCATCCTCCAGAAGAGGAGGTAAGACGGGCCGCATAATGGGGAGGGATGACGAAGATTATGAAGATGATGATGAAGACTGGACAGGTGGACGGAGGAGTAATAGTGGCCGGCAGAGTAGTGGAGTTAGAGCAAGCAGACGGTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_70102.p1 GENE.R_Transcript_70102~~R_Transcript_70102.p1 ORF type:complete len:1781 (+),score=341.71,Nipped-B_C|PF12830.3|2.5e+02,Nipped-B_C|PF12830.3|1.6e+03,Nipped-B_C|PF12830.3|4e+03,Nipped-B_C|PF12830.3|9.9e-50,Cohesin_HEAT|PF12765.3|9.4e+03,Cohesin_HEAT|PF12765.3|7.7e+03,Cohesin_HEAT|PF12765.3|3.2e-13,Cohesin_HEAT|PF12765.3|31,Cohesin_HEAT|PF12765.3|7.6e+03,Cohesin_HEAT|PF12765.3|1.1e+03,PHD|PF00628.25|5.1e-06 R_Transcript_70102:238-5580(+)
MNNNNNHNPNDWTHNKGITLSNTLHSEVAPCFPLPSLPPFCGDSDQELRLFEDQQTRPLNRNDVLAQASKIADLLRHTDVSYLNLKIEATKSCGSSVEPMFLCNEVLRHNPDAFECTLPGPLEERMFSAETGRKIHEIKQHFSNQVQREQAESQNCQRTHVLDDLPSSSTKPRVKKKGSQGVSCAVVTDAGQHQDAVVARFCDVVEDFCSRAEIPGEERDEAEWLLLPTSDIRIVVNEILSIRAEKLLPLVPVDRLEKLLKLLDHQVHRAEGLSIDECEHSDSGASSIFCALEAIHAALAVLAYNDMSKQLYKEEIIERILEFTRRQVMDIMSACDPSYRALHRPGDNGAAEGEDDADADVEYGSASKKRRTSKSVKVKRTMANRVSAAVHTAFQKLCTILGFLKELLLIEFLPDSCILQLVKTSLSTFLVDNIQLLQMKAMGLISGIFYSYTQHRSHVIEEVVQLLWKLPFSKRAARSYHLPDEEQKQIQMITALLLQLVLHSANLPEMLRQTSNNSAIFETAIETNYLTKCNEAATETCVAFWTHVLQRLTSVKSQDASEVKVIMENLVLDLLTTLNLPEYPASSLILEVLCVLLLQNAGPKSKDTSVRTMAIDILGTIAARLKHDSVICQLENLWIVQELVGRENSDRSVLRDTCSVCLDGVVEKVLVICQDCQRLFHPNCMGVREHDISTRGWHCPLCLCKKQLLVLQSYCKSQYKDDCKANRSISEKSCESSESASTMEIVQQMLLNYLEDTVSSDDLHLFARWFYLSLWYKDDPKSRQQFCYRLARLKSKAVIRDSGALSSSLTRDSIKKITLCLGQHSSFSRGFDTILGMLLVSLRENSPVIRAKALRAVSIIVEADPDVLCDKRVQSAVEGRFCDSAISVREAALELVGRHIASHPDVGFQYFEKVAERIKDTGVSVRKRAIKIIRDMCTSNADFPESTNACIEIISRISDEESSIQDLVCKTFYEFWFEEPSGRQYFGDDSSVPLEVARKTEQIVDMLRRMPSNQPLVTVIKRNLALDFLPQTKMMGINPVSMASVRRRCEMMCMFSMERILQVEEMNLEEGEVRILPYVTVLHAFCLVDPSLCAPASNPSQFVVTLQPYLKNQVDNRVVAQLLESIIFIIDAVLPLLRKLPQSVVEELEQDLKQMIVRHSFLTVVHACIRCLCSLSKIAGKGARLIQFLIQVFIKHLDALDVDNKQQVGRSLFCLGLLIRYGNGLLSSFTGGVDIAGSLSLFKKYLLADDFVIKVRALQALGFFLIARPECMLEKDVGKILTSTLSSGCDARLKLQALQNLYDYLLDAESQLGSDKVEDNIIDCSGDGGSAVPVAAGAGDTNICGGIVQLYWDRISERSLDTNDQVRQSSLKIVEVALRQGLVHPITCVPYLIALETDPLEANSKLAHHLLMNMNEKYPAFFESRLGDGLQLSFNFINSMSENSANMNPKLHYRGAENVKGKTEDASFANARLGVSRIYKLIRANRVARNKFMSSVVRKYDNPSWSETVVPFLMYCTDILALLPFTTPDEPLYLVYTINRVIQVRSGTLEASLKAFSHHFSQRSSQKVHMENGGSTWQELAANSIAASAISLELNGEVQEPADGYISGTTMQHGNPSTSSSGPRLLTEEDLQRIQAVCLAATALQLLLKLKRHLKVVYNLDDVRCQAFSPTEPPKSGEVLSKQNVPFSVGNIHSNLPSTSEELTQRYQEFKNALREDTVDYSTYTANIKRKRPSSRRGGKTGRIMGRDDEDYEDDDEDWTGGRRSNSGRQSSGVRASRRF*

Click here to download the sequence:
Link to NCBI Protein BLAST