Transcript Information: R_Transcript_70164.p1


Annotated TAIR IDAT1G22860.1
Annotated Gene NameVacuolar sorting protein 39
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:8083400-8088867 | Forward length=961
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.3924491866611
Replicate 24.1782637828433
Replicate 36.8033010660573
Condition 2: 8 Hour
Replicate 15.8031499924971
Replicate 26.3728513247379
Replicate 38.9668956464712
Condition 3: 24 Hour
Replicate 17.8745278791025
Replicate 28.2045563072947
Replicate 38.4048785997686


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_70164.p1 GENE.R_Transcript_70164~~R_Transcript_70164.p1 ORF type:complete len:1000 (+),score=204.60,Vps39_2|PF10367.5|1.6e+04,Vps39_2|PF10367.5|2.7e-26,Clathrin|PF00637.16|3.2e+03,Clathrin|PF00637.16|0.085,Clathrin|PF00637.16|2.6e-09,CNH|PF00780.18|1.4,CNH|PF00780.18|1.4e-05,CNH|PF00780.18|1.3e+02,Vps39_1|PF10366.5|3.1e+02,Vps39_1|PF10366.5|3.6e-07,Vps39_1|PF10366.5|1.4e+03 R_Transcript_70164:243-3242(+)
ATGGCGAAAGTGGAACCCATGAATTCACGAACAGTATTAAAATCTGTTGCACATTTTGACCTATCATCAAACACTTCAATCTCATCACCCTCTTGCCTCGCAATTTCCAAAATCTCTGATGATGATTCTCAGTTGCTAATCTATCTTGGTACTCACTCTGGTGCCCTCGTTTTACTAACCCTAAATTCATCATTTGAGGATCATGATGATGGTGGTAATGGTAATGGTAAGGTGAAGCTTTTGAGATTTGTATCTGTGAGTCACTCTCCCATTGGTTCTATACATGTATTTGCTCAATTTGGTACTGTTTTGGTTGTTTCTGATGGATATTTGTATTTTGTTGACTTGCAATTAATGCATCCTGTGAAGAGGTTAGGTCTTTTTAAGGGTGTTAGTGCTGTTGCTAGGAGAGTTTTGAGTTCTGGTTGTCCGAGGTCGAATTCGGTACAAGAGGAGGGAGACGGGGAGGGGGAGGGTTTTGTGGGAGAGAACCAAAAAAACCTTATTAGTAGTGGTAGTAGTGTGGGCGAGCGGTTTATTAAGCGATTAGGGGGCGGGATTAGATCGAATGGAGTGAAAGGTAAGGAGTTTGAATTGGGTAGAGATGATAGTTGTGTTTTCGCTGTGGCAGCAGGGAAGAAGGTGGTGCTTGTAGAACTAGGTTCGGGTCGGGGTTTCGATGGGTCTTTGGTGGTTTTGAAAGAAATTCATGGTATTGAAGGTGTGAAATCAATGGCTTGGCTTGATGATTCGATAATCTTTGGGACCGCAAGTGGGTATAGTTTGTTGTCTTGCGGTACGGGGCAGGTTTATTTGATTTTTTCGCTTCCTGATATGGAGACTACACCTTGTGTCAGATTAATGTCGAAAGAACGTAATGTGCTTTTGCTTGTTGACAATGCGGGGATCATTGTGAACGGTCAAGGGCAGCCTGTTGGTGGCAGCTTGGTCTTTCGTCGTGCTCAGGAGTCCATTGCTGAGTTGTCGTCATATGTGGTAGTTGGTAAGGATGGGAAAATGGAATTGTATCATAAAGGATCAGGAACTTGTGTTCAGGCTATCTCTTTTGGGGGGATTGGGGTTGGTCGTTGCTTTCTTGCTGATGAGGAGGACGGGAATGGAAGATTTGTTGTTGTTGCTGCATCATCCAAGGTGCTTTGCTACCATAAAATACCCTCTGAAGAACAAATTAAAGAGCTTTTACGAAAGAAGAATTTCAAGGAAGCAATCTCATTGGCAAAGGAACTTGAAGCTGAAGGCGACTTATCTCGAGAAATGCTGTCTTTTATACATGCTCAAGTGGGATTCCTTTTGCTTTTTGACTTGCACTTCGAGGAAGCTGTTGATCATTTCTTACTATCAGAGACCATGCAGCCTTCTGAGATATTCCCATTTGTTATACAAGATCCCAATCGCTGGTCACTTCTGGTTCCAAGGAACAGGTATTGGGGTTTGCATCCACCTCCAGCACACATTGAGGCGGTTGTTGAAGATGGGTTATTGGCCATCCAAAGAGCAATCTTTTTGAAGAAAGCTGGAGTGGAGACAGCTATAAGTAGTCATTTTCTTTCGGTTCCACCAAGTCGGGCTGATCTTTTGGACTTTGCATTTAAAAACATTATTAGGTATATGCAGGTGATCCGGCATAAGGATCTTAGTCCACCCGTGAAGGAAGGAGTTGACACGCTTCTAATGTACCTGTACAGAACTCTCAATTACACCGAAGATATGGAGAAATTAGCATCTTCAGAGAATAGCTGTGTTGTAGAGGAGTTGGAAACTTTGTTGGAAGAGTCTGGGCATTTGAGAACCCTTGCTTTTCTGTATGCGAACAAAGGAATGAGTTCAAAAGCTTTAGCTATTTGGCGTGTACTAGCTCGAAACTATCCATCTGGCTTGCCCCAAGAGAATCCTGAGAGATATGATTTGAATGATACATATTCGCTACCTGTTTTGAGCAAAGAAACTGCTGCAGTTGAAGCATCTAAAATTCTTGAGGAGTTAGCCGAGGAAGAATTAGTTCTACTACATCTTGGATGGATTTCAGAAATTAGTGAGGAACTCGCAATTCAAGTTTTAACATCTGAGAAAAGGATCAGTACACTGCCACCTGATAATGTGATTGCAGCTATTGACCCAAGAAAGGTTGAGATTCTTCAAAGATATCTCCAGTGGTTGATTGAAAATCAAGGCTCAAGTGATACTCAGTTCCATACATTGTATGCTCTTTCCCTTGCCAGATCAGCTCTTGAAACTCTGGAGCAGGAAAATAACTATGGCTTTGGGAAGACTTCTCCGTCAGAGAACCCCGTCAGAGAAAGACTACAATTTTTCTTACATTCTTCCGATTTATATGATGCGGAAGAGGTGCTTGAGTTGGTTGAAGGCTCCGAATTATGGCTTGAGAAGGCTATCTTATACAGGAAATTAGGTCAAGAGACATTGGTCCTTCAGATTTTAGCTTTGAAGCTGGAAGACAGTGAAGCCGCTGAACAATATTGCGCTGAACTTGGCAGACCAGATGCCTATATGCAGTTGCTTGATATGTATTTGGATCCCCAGAATGGTAAAGAGCCTATGTTCAAGGCTGCAGTTCGCCTTCTTCACAATCATGGAGAATCTCTTGACCCGCTGCAAGTCTTAGAGAGATTGTCACCAGATATGCCTCTGCAACTTGCATCTGAAACAATATTAAGAATGCTAAGAGCTCGACATCACCATCGTCTTCAAGGAAAAATTGTGCATAGCCTTTCCAGTGCGGTTGATGTTGATGCTAGTCTTGCAATGCTGGAGGAGAGGGTGCGCCATGTGCAAATAAATGATGAGAGTCTATGTGATTCCTGCCATGCTCGTCTAGGAACCAAGCTGTTTGCTATGTATCCCGATGATTCCATTGTTTGTTACAAGTGTTACCGTCGTCAAGGGGAATCAACTTCTGTAACAGGACGCAATTTTAAGAACGATATATTGGTAAAACCTGGCTGGCTCGTGACCAGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_70164.p1 GENE.R_Transcript_70164~~R_Transcript_70164.p1 ORF type:complete len:1000 (+),score=204.60,Vps39_2|PF10367.5|1.6e+04,Vps39_2|PF10367.5|2.7e-26,Clathrin|PF00637.16|3.2e+03,Clathrin|PF00637.16|0.085,Clathrin|PF00637.16|2.6e-09,CNH|PF00780.18|1.4,CNH|PF00780.18|1.4e-05,CNH|PF00780.18|1.3e+02,Vps39_1|PF10366.5|3.1e+02,Vps39_1|PF10366.5|3.6e-07,Vps39_1|PF10366.5|1.4e+03 R_Transcript_70164:243-3242(+)
MAKVEPMNSRTVLKSVAHFDLSSNTSISSPSCLAISKISDDDSQLLIYLGTHSGALVLLTLNSSFEDHDDGGNGNGKVKLLRFVSVSHSPIGSIHVFAQFGTVLVVSDGYLYFVDLQLMHPVKRLGLFKGVSAVARRVLSSGCPRSNSVQEEGDGEGEGFVGENQKNLISSGSSVGERFIKRLGGGIRSNGVKGKEFELGRDDSCVFAVAAGKKVVLVELGSGRGFDGSLVVLKEIHGIEGVKSMAWLDDSIIFGTASGYSLLSCGTGQVYLIFSLPDMETTPCVRLMSKERNVLLLVDNAGIIVNGQGQPVGGSLVFRRAQESIAELSSYVVVGKDGKMELYHKGSGTCVQAISFGGIGVGRCFLADEEDGNGRFVVVAASSKVLCYHKIPSEEQIKELLRKKNFKEAISLAKELEAEGDLSREMLSFIHAQVGFLLLFDLHFEEAVDHFLLSETMQPSEIFPFVIQDPNRWSLLVPRNRYWGLHPPPAHIEAVVEDGLLAIQRAIFLKKAGVETAISSHFLSVPPSRADLLDFAFKNIIRYMQVIRHKDLSPPVKEGVDTLLMYLYRTLNYTEDMEKLASSENSCVVEELETLLEESGHLRTLAFLYANKGMSSKALAIWRVLARNYPSGLPQENPERYDLNDTYSLPVLSKETAAVEASKILEELAEEELVLLHLGWISEISEELAIQVLTSEKRISTLPPDNVIAAIDPRKVEILQRYLQWLIENQGSSDTQFHTLYALSLARSALETLEQENNYGFGKTSPSENPVRERLQFFLHSSDLYDAEEVLELVEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAELGRPDAYMQLLDMYLDPQNGKEPMFKAAVRLLHNHGESLDPLQVLERLSPDMPLQLASETILRMLRARHHHRLQGKIVHSLSSAVDVDASLAMLEERVRHVQINDESLCDSCHARLGTKLFAMYPDDSIVCYKCYRRQGESTSVTGRNFKNDILVKPGWLVTR*

Click here to download the sequence:
Link to NCBI Protein BLAST