Transcript Information: R_Transcript_70166.p1


Annotated TAIR IDAT1G22860.1
Annotated Gene NameVacuolar sorting protein 39
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:8083400-8088867 | Forward length=961
E-Value1.2E-138
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.494057062652
Replicate 215.859590834329
Replicate 312.329008614443
Condition 2: 8 Hour
Replicate 112.579893917851
Replicate 215.522691675685
Replicate 316.930401343174
Condition 3: 24 Hour
Replicate 115.86686371089
Replicate 214.568611377262
Replicate 311.914408055865


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_70166.p1 GENE.R_Transcript_70166~~R_Transcript_70166.p1 ORF type:5prime_partial len:327 (+),score=67.51,Vps39_2|PF10367.5|4.2e-27,Clathrin|PF00637.16|8.5e-10 R_Transcript_70166:3-983(+)
ACAGCAGCCCACCTTCCCTCGCCGGAGAAGACAGCAGCCCACCTTCCCTCGACGGAGAAGACAGCAGCTTGCCGGCCGGACATCCCACCTCCTGATAATGTGATTGCAGCTATTGACCCAAGAAAGGTTGAGATTCTTCAAAGATATCTCCAGTGGTTGATTGAAAATCAAGGCTCAAGTGATACTCAGTTCCATACATTGTATGCTCTTTCCCTTGCCAGATCAGCTCTTGAAACTCTGGAGCAGGAAAATAACTATGGCTTTGGGAAGACTTCTCCGTCAGAGAACCCCGTCAGAGAAAGACTACAATTTTTCTTACATTCTTCCGATTTATATGATGCGGAAGAGGTGCTTGAGTTGGTTGAAGGCTCCGAATTATGGCTTGAGAAGGCTATCTTATACAGGAAATTAGGTCAAGAGACATTGGTCCTTCAGATTTTAGCTTTGAAGCTGGAAGACAGTGAAGCCGCTGAACAATATTGCGCTGAACTTGGCAGACCAGATGCCTATATGCAGTTGCTTGATATGTATTTGGATCCCCAGAATGGTAAAGAGCCTATGTTCAAGGCTGCAGTTCGCCTTCTTCACAATCATGGAGAATCTCTTGACCCGCTGCAAGTCTTAGAGAGATTGTCACCAGATATGCCTCTGCAACTTGCATCTGAAACAATATTAAGAATGCTAAGAGCTCGACATCACCATCGTCTTCAAGGAAAAATTGTGCATAGCCTTTCCAGTGCGGTTGATGTTGATGCTAGTCTTGCAATGCTGGAGGAGAGGGTGCGCCATGTGCAAATAAATGATGAGAGTCTATGTGATTCCTGCCATGCTCGTCTAGGAACCAAGCTGTTTGCTATGTATCCCGATGATTCCATTGTTTGTTACAAGTGTTACCGTCGTCAAGGGGAATCAACTTCTGTAACAGGACGCAATTTTAAGAACGATATATTGGTAAAACCTGGCTGGCTCGTGACCAGGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_70166.p1 GENE.R_Transcript_70166~~R_Transcript_70166.p1 ORF type:5prime_partial len:327 (+),score=67.51,Vps39_2|PF10367.5|4.2e-27,Clathrin|PF00637.16|8.5e-10 R_Transcript_70166:3-983(+)
TAAHLPSPEKTAAHLPSTEKTAACRPDIPPPDNVIAAIDPRKVEILQRYLQWLIENQGSSDTQFHTLYALSLARSALETLEQENNYGFGKTSPSENPVRERLQFFLHSSDLYDAEEVLELVEGSELWLEKAILYRKLGQETLVLQILALKLEDSEAAEQYCAELGRPDAYMQLLDMYLDPQNGKEPMFKAAVRLLHNHGESLDPLQVLERLSPDMPLQLASETILRMLRARHHHRLQGKIVHSLSSAVDVDASLAMLEERVRHVQINDESLCDSCHARLGTKLFAMYPDDSIVCYKCYRRQGESTSVTGRNFKNDILVKPGWLVTR*

Click here to download the sequence:
Link to NCBI Protein BLAST