Transcript Information: R_Transcript_70680.p1


Annotated TAIR IDAT5G19300.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6495593-6497987 | Forward length=398
E-Value1.8E-157
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.448729543314
Replicate 217.930009018868
Replicate 322.736638059547
Condition 2: 8 Hour
Replicate 117.576487214607
Replicate 218.597169056036
Replicate 322.779372734
Condition 3: 24 Hour
Replicate 128.526780268088
Replicate 226.040491313875
Replicate 328.118115674504


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_70680.p1 GENE.R_Transcript_70680~~R_Transcript_70680.p1 ORF type:complete len:404 (+),score=81.54,Methyltrn_RNA_3|PF02598.13|4.7e-101 R_Transcript_70680:81-1214(+)
ATGGGGAAGAAGAAGAAGAAGAGATCAGAAGCTGAACTCCAAGAAGAAGACAACTTACATCCTGAGAAGAAGAAGCTACTGAACGAAGAAGCTGACCTCAGCAATGGCTTCAGCTCTGATAACACAAATTCGAATAAAAAGAAGAAGAAGAAGAAACGCAGAACAGAGAAAGAGAAAGAGGACTCAAAACTCGACATTGAAAACACAAATACTATTCCAACTGTTAGCATCGCCATTCCTGCTTCCATTGTCGACAACGCTCAGTCTCTCGAGCTCGCTACTCGTCTAGCTGGTCAAATTGCTAGGGCTGCCTCAATCTATCGAATTGATGAGGTGGTTGTGTTTGATAATAATGGTATTTCAATGGATGATCCAACTGTATCAAGTAAAGGGTGTAGTGATGAGGATGAAAGCAGTGCAGCATTTTTTATAAGAATATTGCGGTACCTTGAGACACCTCAGTATCTAAGAAAGAGCCTATTTCCAAGGCATAGTAGCTTAAGATTTGTGGGCATGTTACCTCCCCTTGATGCGCCTCATCATCTTCGCAAGCATGAATGGGGATCTTATAGAGAAGGTGTAACTCTGAGAGAACGAACTGCAAACCCTCTTGGTACATTTGTAGACGTGGGCTTAAGCAAGAATGTTGTGGTTGATCAAGTGCTTGACCCAGGAATAAGGGTTACTGTAGCCATGGGAACTGACCGTAATCTGAATCCAGGGGTATTACGTCAGGTTGTCCCATCTACTACACCTAAGAAAGAAGAGGACACATACTGGGGTTATAAAGTAAGATATGCTCCAAACTTGAGCTCTGTGATTGAGGGATGCCCATATGAGGGTGGTTATGACTATGTGATTGGTACATCAGAGCACGGCCAGGTTGTCAAGTCGTCCAAGCTTTCTATACCAACTTTCAGGCATCTTCTGATAGCATTTGGTGGCCTGGCTGGTTTGGAAGAGAACATCGAGGAGGACAATAAGTTAAAGGGAAAGAATGCACGCGATGTGTTTAATTTGTATTTGAACCTGTGTCCTAATCAAGGTAGCCGGACAATTAGAACAGAGGAAGCAATCTTCATCTGTCTTCAGTATTTTCAAGAACCAATTTGCCAAGCATTGCTAAACGAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_70680.p1 GENE.R_Transcript_70680~~R_Transcript_70680.p1 ORF type:complete len:404 (+),score=81.54,Methyltrn_RNA_3|PF02598.13|4.7e-101 R_Transcript_70680:81-1214(+)
MGKKKKKRSEAELQEEDNLHPEKKKLLNEEADLSNGFSSDNTNSNKKKKKKKRRTEKEKEDSKLDIENTNTIPTVSIAIPASIVDNAQSLELATRLAGQIARAASIYRIDEVVVFDNNGISMDDPTVSSKGCSDEDESSAAFFIRILRYLETPQYLRKSLFPRHSSLRFVGMLPPLDAPHHLRKHEWGSYREGVTLRERTANPLGTFVDVGLSKNVVVDQVLDPGIRVTVAMGTDRNLNPGVLRQVVPSTTPKKEEDTYWGYKVRYAPNLSSVIEGCPYEGGYDYVIGTSEHGQVVKSSKLSIPTFRHLLIAFGGLAGLEENIEEDNKLKGKNARDVFNLYLNLCPNQGSRTIRTEEAIFICLQYFQEPICQALLNE*

Click here to download the sequence:
Link to NCBI Protein BLAST