Transcript Information: R_Transcript_70686.p2


Annotated TAIR IDAT5G19300.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF171 (InterPro:IPR003750); Has 3649 Blast hits to 1964 proteins in 291 species: Archae - 113; Bacteria - 121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses - 4; Other Eukaryotes - 1703 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6495593-6497987 | Forward length=398
E-Value2.7E-56
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7246892240679
Replicate 20.33065040025666
Replicate 30
Condition 2: 8 Hour
Replicate 10.38560417239756
Replicate 20
Replicate 30.28585213575413
Condition 3: 24 Hour
Replicate 10.90385067825607
Replicate 20.69465382332527
Replicate 30.68937652557157


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_70686.p2 GENE.R_Transcript_70686~~R_Transcript_70686.p2 ORF type:complete len:127 (+),score=19.85,Methyltrn_RNA_3|PF02598.13|1e-34 R_Transcript_70686:503-883(+)
ATGGATGATCCAACTGTATCAAGTAAAGGGTGTAGTGATGAGGATGAAAGCAGTGCAGCATTTTTTATAAGAATATTGCGGTACCTTGAGACACCTCAGTATCTAAGAAAGAGCCTATTTCCAAGGCATAGTAGCTTAAGATTTGTGGGCATGTTACCTCCCCTTGATGCGCCTCATCATCTTCGCAAGCATGAATGGGGATCTTATAGAGAAGGTGTAACTCTGAGAGAACGAACTGCAAACCCTCTTGGTACATTTGTAGACGTGGGCTTAAGCAAGAATGTTGTGGTTGATCAAGTGCTTGACCCAGGAATAAGGGTTACTGTAGCCATGGGAACTGACTGTAATCTGAATCCAGGTTGTCCTATCTACTACACCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_70686.p2 GENE.R_Transcript_70686~~R_Transcript_70686.p2 ORF type:complete len:127 (+),score=19.85,Methyltrn_RNA_3|PF02598.13|1e-34 R_Transcript_70686:503-883(+)
MDDPTVSSKGCSDEDESSAAFFIRILRYLETPQYLRKSLFPRHSSLRFVGMLPPLDAPHHLRKHEWGSYREGVTLRERTANPLGTFVDVGLSKNVVVDQVLDPGIRVTVAMGTDCNLNPGCPIYYT*

Click here to download the sequence:
Link to NCBI Protein BLAST