Transcript Information: R_Transcript_71307.p1


Annotated TAIR IDAT1G44910.1
Annotated Gene Namepre-mRNA-processing protein 40A
Annotated Gene Symbol(s)ATPRP40A, PRP40A
Annotation TypeOrtholog
Chromosome Positionchr1:16975930-16982818 | Forward length=958
E-Value1.5E-297
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.172598792946
Replicate 28.0499649817427
Replicate 38.9182357834823
Condition 2: 8 Hour
Replicate 110.186313382204
Replicate 210.937387857102
Replicate 311.999434293517
Condition 3: 24 Hour
Replicate 110.707593884858
Replicate 28.3905876214153
Replicate 310.186866509416


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_71307.p1 GENE.R_Transcript_71307~~R_Transcript_71307.p1 ORF type:complete len:1012 (+),score=293.57,FF|PF01846.15|1.1e-16,FF|PF01846.15|7.5e-16,FF|PF01846.15|8.8e-08,FF|PF01846.15|2.9e-06,FF|PF01846.15|3.6e+03,FF|PF01846.15|0.0015,WW|PF00397.22|3.3e-07,WW|PF00397.22|3.1e-08 R_Transcript_71307:391-3426(+)
ATGGCAAACAACCCTCAATTTTCTGGTGCACCGGGTCCGCCTCTCCGTCCACCTATGGTTGGTTCTGTTGGTCCCCCTCAAAATGTTCCTCCACCCATGCCGGCTCAGTTTCGGCCCATGGCTTCTGTGCATCCATCTCAACCGTTTGCTCCCCAAGTATCTCAACAGTATCAGTCTCTTGGAGCTGGTATTCCTGCAATGAATGTAGGAATGCCTCCACAACAAATCCAACAACTGCAGTTTGCTCAACCAATGCAACAAACACCTGTGAGGCCTATCCTGCCAGGTCACCTTCCTCCTATGTCACAGTCTATGCCATTGTCTAACCTTAACAGGCCTATGTCCTCTGGATTGCAACAGCCTGTGCAAAATATGCAGGCTCCAGGTAGCTTTATCCCTGCCTCAGGTGGTCAAGCAATGCCTCTTCCTCCATCATATGCTCCAAATACTTTCCCCACATCTCAATATCAGCCAGTATCTCAATTGAATGCTCAGAACAATCCTGTTTCTGGGCCACCTTTTCTGGCCTCTGGAAATCAGGATGCTGTTTCAATAACACCATCGCAGCTGGATGAACAGACTTTAACATCTGTTTCCTCAGTTTCGACAGTTGATTCTCAGCCTAAGAATATGGAACAATCTTCCTCTGACTGGTTGGAACACACCAATAATGGAAGAAGATTTTACTACAACAAGAAGACAAGGCAGTCTACTTGGGAGAAACCTTTGGAGCTGATGACTCCTCTTGAGAGAGCTGATGCAACTACCAACTGGAAGGAGTACACAAGTCCTGATGGAAGAAAGTATTTCTATAACAAAGTTACAAAACAGTCAAAGTGGACCATTCCCGAAGAGCTCAAGCTGGCTCGGGAACAAGCAGAAAAGGGAGGATCCTCTGTAATGAAAGTTGCTGGAAACTCTCATCCTCCAGACTCTGCTCCTTTAACTGATGACAAAACACAATCTAATGCTGATGCAAAATCTAGTAATCCTGTGGTGACTTCAAGTCCAGTAGCAGTGACACCTGTGACTGTTTCTGCCACATCACCAAGTTCTACATCAAATGCAATGGATTCCTTGCCTCTTAGGGACCAGGGGAAACTTACAGATGCAGTTGAAGATCATTCACATGCTAGTGCAGCTGCCTCTGGAAATGCTGACTTGCTTGCTGCTTCTGCTGGCACTGCAGATTTTCCAATGAATGGATCTAGTTTAGTTGCTGATGAAGCTGCAGATTCTCCGAAAAACGTTATTGCAGAGGATGGCGAGGAACCCAATAAGAGTGCAGACACTCCTGGGAAGACAAATGTCATTACCACAGAAGAAAAACCAATTGAGCGTGAAACCGTAACTTATGCTAGCAAACAGGAAGCAAAAGAGGCATTTAAATCACTTCTTGAATCAGCAAATGTTGAGTCTGATTGGACCTGGGAGCAGGCTATGAGGTTAATCATCAATGACAAAAGATATGCTGCTCTTAGATCACTTGGAGAACGGAAGCAAGCTTTCAATGAGTACTTGAGTCAACGACGAAAACAGGAGGCTGAGGAAAGGCGTGCAAAATACAAAAAAGCGAGGGAGGACTTCAGGAAAATGTTGGAAGAATGTAGCGAGCTGACTTCAACGACAAGATGGGGGAAAGCAGTTAATATGTTTGGTGATGATGAGCGTTTTAAAGCCATTGAGCGAGCAAGAGATCGTCAAGATTTGTTTGAGGAGTATTTGTCTGAACTTGAAAAGAAGGAACGAGCAAAAGCAGAAGAAGAACGTCAGCGGAATATAACAGAGTACAGGAAATTTCTGGAATCATGTGACTTTATCAAGGCAAGTAGTCAATGGCGGAAAGTCAAAGACCGTTTGGAGGCTGATGAAAGATGTAGACGACTCGAAACAATAGATAGATTGAAACTTTTTCAGGAATATGTCGGTGATTTGGAGAAGGATGAGGAAGAGCAAAGGAGAATACAAAAGGAAGAATTAAGAAAAAGCGAACGGAGAAACCGTGATGAGTTTCGCAAGTTGATGGAAGAACATGTTGCTGTTGGCACTCTAACGGCCAAGACTAATTATCGTGATTATCATTCAAAGGTAAAAGATCTACCGGCATATCTGGCAGTCGCTTCCAATAGTGCAGGTTCAACTCCTAAAGAGTTGTTTGAGGATGTAACTGAAGAGCTTAAGAAACAGTATCAAGAAGATAGGACAAGGATTAAGGATGCAGTCAAGTCTGAAAAGGTTGCCTTATCTTCGATCTGGACCCTTGAAGACTTCAAAGCTGCAATTTCCAATGAGATCAGCTCCACCGAAGTGTCAGAGAACAACTTAAAGCTAGTTTTTGACGAGTTGCTGGAAAGAGTCAGAGAGAAGGAAGAAAAAGAAGCAAAAAGGCGAAAGAGACTTGGAGATGAATTCTTTAACTTGCTGTGTTCCCTTAAGGATATCACTGGTGATTCAAAGTGGGAGGAGTGCCTACCACTTTTTGATGCCCGAGAAGAGTTTAGGTCAATTGGGGAAGAGGCTTTTTCTAAGCAGATCTTTGAGGAATATCTTGCACAGTTGAAAGAAAAGGAAAAGGAGAAGGAACGAAAGAGAAAAGAGGAGAAGGCAAAAAAAGATAAGGAGAGGGAAAGAGACAAAAGGTCCAAGGAAAGAAGAGATAAAGACCGGAGGCATGATAGGGAGAGAGGGAAAGAACGGGTTGACAAGGATGACGGAGATGGTGGACCTGATTTTAATGAAATTTCTGTATCAATTGAAAACAGAAAATCAGGAAGAGACAAGGATAGGAAGCATCGGAAACGGCATCATGAGGAAGAGAATGATGTCAGTTTGGAGAAGAATGGAAAGGATCATTCTAAGAGTTCCCATAGGCATAGCAGTGAACGCAAAAGGTCTAGACAGGTGGAACAGTATGAGGATATACCTGAATCTGACAGCGAAAGTAAGAATAAGAAACACAAGAGAGAGCATCGTAATGGTTCTCGTAAAAGAGGTGACACTGAGGAACTTGAAGATGGGGAGCTTGGTAACTGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_71307.p1 GENE.R_Transcript_71307~~R_Transcript_71307.p1 ORF type:complete len:1012 (+),score=293.57,FF|PF01846.15|1.1e-16,FF|PF01846.15|7.5e-16,FF|PF01846.15|8.8e-08,FF|PF01846.15|2.9e-06,FF|PF01846.15|3.6e+03,FF|PF01846.15|0.0015,WW|PF00397.22|3.3e-07,WW|PF00397.22|3.1e-08 R_Transcript_71307:391-3426(+)
MANNPQFSGAPGPPLRPPMVGSVGPPQNVPPPMPAQFRPMASVHPSQPFAPQVSQQYQSLGAGIPAMNVGMPPQQIQQLQFAQPMQQTPVRPILPGHLPPMSQSMPLSNLNRPMSSGLQQPVQNMQAPGSFIPASGGQAMPLPPSYAPNTFPTSQYQPVSQLNAQNNPVSGPPFLASGNQDAVSITPSQLDEQTLTSVSSVSTVDSQPKNMEQSSSDWLEHTNNGRRFYYNKKTRQSTWEKPLELMTPLERADATTNWKEYTSPDGRKYFYNKVTKQSKWTIPEELKLAREQAEKGGSSVMKVAGNSHPPDSAPLTDDKTQSNADAKSSNPVVTSSPVAVTPVTVSATSPSSTSNAMDSLPLRDQGKLTDAVEDHSHASAAASGNADLLAASAGTADFPMNGSSLVADEAADSPKNVIAEDGEEPNKSADTPGKTNVITTEEKPIERETVTYASKQEAKEAFKSLLESANVESDWTWEQAMRLIINDKRYAALRSLGERKQAFNEYLSQRRKQEAEERRAKYKKAREDFRKMLEECSELTSTTRWGKAVNMFGDDERFKAIERARDRQDLFEEYLSELEKKERAKAEEERQRNITEYRKFLESCDFIKASSQWRKVKDRLEADERCRRLETIDRLKLFQEYVGDLEKDEEEQRRIQKEELRKSERRNRDEFRKLMEEHVAVGTLTAKTNYRDYHSKVKDLPAYLAVASNSAGSTPKELFEDVTEELKKQYQEDRTRIKDAVKSEKVALSSIWTLEDFKAAISNEISSTEVSENNLKLVFDELLERVREKEEKEAKRRKRLGDEFFNLLCSLKDITGDSKWEECLPLFDAREEFRSIGEEAFSKQIFEEYLAQLKEKEKEKERKRKEEKAKKDKERERDKRSKERRDKDRRHDRERGKERVDKDDGDGGPDFNEISVSIENRKSGRDKDRKHRKRHHEEENDVSLEKNGKDHSKSSHRHSSERKRSRQVEQYEDIPESDSESKNKKHKREHRNGSRKRGDTEELEDGELGNW*

Click here to download the sequence:
Link to NCBI Protein BLAST