Transcript Information: R_Transcript_71345.p1


Annotated TAIR IDAT4G34110.1
Annotated Gene Namepoly(A) binding protein 2
Annotated Gene Symbol(s)PAB2, PABP2, ATPAB2
Annotation TypeOrtholog
Chromosome Positionchr4:16336732-16339892 | Forward length=629
E-Value8.6e-316
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1759.9214518265
Replicate 2468.99171794827
Replicate 3603.50042207041
Condition 2: 8 Hour
Replicate 1536.60828766027
Replicate 2587.45667271084
Replicate 3654.94536772619
Condition 3: 24 Hour
Replicate 1650.20411850967
Replicate 2514.76773444001
Replicate 3653.64192448883


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_71345.p1 GENE.R_Transcript_71345~~R_Transcript_71345.p1 ORF type:complete len:659 (+),score=191.92,RRM_1|PF00076.18|2e-19,RRM_1|PF00076.18|1.1e-21,RRM_1|PF00076.18|3.2e-24,RRM_1|PF00076.18|8.7e+03,RRM_1|PF00076.18|8.6e-20,RRM_6|PF14259.2|5.3e-09,RRM_6|PF14259.2|4.5e-12,RRM_6|PF14259.2|9e-16,RRM_6|PF14259.2|1.3e-12,RRM_5|PF13893.2|1e-05,RRM_5|PF13893.2|3.1e-09,RRM_5|PF13893.2|5.5e-08,RRM_5|PF13893.2|9.6e-06,PABP|PF00658.14|8.8e+02,PABP|PF00658.14|4.4e-26,RRM_occluded|PF16842.1|2.1e+02,RRM_occluded|PF16842.1|27,RRM_occluded|PF16842.1|0.0032,RRM_occluded|PF16842.1|0.0021,Nup35_RRM|PF05172.9|4.2e+02,Nup35_RRM|PF05172.9|0.014,Nup35_RRM|PF05172.9|49,Nup35_RRM|PF05172.9|20,RRM_7|PF16367.1|10,RRM_7|PF16367.1|0.27,RRM_7|PF16367.1|18,RRM_7|PF16367.1|5.4e+02,Nup35_RRM_2|PF14605.2|8.1e+02,Nup35_RRM_2|PF14605.2|0.82,Nup35_RRM_2|PF14605.2|13,Nup35_RRM_2|PF14605.2|7,RRM_3|PF08777.7|1.1e+03,RRM_3|PF08777.7|0.21,RRM_3|PF08777.7|0.94,RRM_3|PF08777.7|19,RRM_3|PF08777.7|4.9e+03 R_Transcript_71345:658-2634(+)
ATGGCCCAGGTCCAGCTTCAACCAAATGGTGCGGTGGTGGGTCCCACTGCTGCCGGTGCCGGTGGTGGTGGGTCCACTGGTGGGCCCCAGTTCGTAACGGTGTCGCTTTATGTGGGGGATTTGGATTGGAATGTGACTGATTCACAACTGTACGATCTGTTCAATCAAGTCGGTCAAGTTCAATCTGTCAGGGTTTGCCGGGATTTGACTACTCGGAGATCACTTGGCTATGGTTATGTCAACTATAGTAGCCACCCAGATGCTGCAAGAGCCATAGAGGTGCTGAACTTTACTCCCCTCAATAACAAGCCTATCAGGATAATGTATTCTCACCGTGATCCTAGTATCCGTAAAAGTGGAGCTGGAAATATCTTTATCAAGAATTTGGACAGGGCCATTGACAACAAAGCATTGCATGAAACATTTTCTTCCTTTGGGAACATTCTCTCTTGCAAAGTTGCTACAGATGCATCAGGCCAGTCAAAAGGTTATGGTTTTGTGCAGTATGATAATGAGGAATCTGCCCAAAAAGCAATAGAGAAGCTGAATGGCATGCTGTTGAATGACAAGCAAGTCTATGTTGGACCGTTCCTGCGCAGGCAGGAAAGAGAAAATTTTACTGACAAAACAAGGTTCACCAATGTGTTTGTTAAGAATCTTGCTGAGTCGACAACAGATGAAGATTTGAACAATACTTTTAGCCAATATGGGAAAATTACGAGTGCTGTTGTGATGCGTGATGTAGATGGGAAATCAAAATGCTTTGGCTTTGTGAACTTTGAAGATGCAGATGACGCTGCTAAGGCTGTGGAAGCTCTGAATGGGCAGAAGTTTGATGACAAGGAGTGGTTTGTTGGTAAAGCCCAGAAAAAGGCTGAAAGGGAAGCTGAACTGAAGCATCGATTTGAGCAGAGTATGAAAGAAGCAGTGGACAAATACCAAGGAACTAACCTCTACATTAAAAATTTAGATGATACCATAGATGATGAGAAGCTCAGAGAGTTATTTGCTCAATTTGGTACAATTACTTCATGCAAGGTCATGCGAGATCCTACTGGTGTAAGCAAGGGATCAGGTTTTGTTGCATTTTCGACTGCTGAAGAGGCATCTCGAGCTTTAATGGAGATGAATGGCAAGATGATTGTTAGCAAGCCTCTTTATGTTGCTCTTGCTCAACGTAAAGAAGATAGAAGAGCAAGGCTACAGGCCCAGTTCTCGCAAATGCGTACTGTTGCAATGCCATCATCTGCTGCTCCTAGGATGCCCATGTATCCACCTGGTGGTCCGGGGCTTGGAGGACAGCTATATTATGGCCAAGCACCTCCTGCTATTATTCCGCCTCAGCCTGCATTTGGATATCAACATCAGCTCATGCCTGGGATGAGGGGCGGCGCTCCGGTGCCAAATTTCTTTGTCCCTATGGTCCAGCAAGGGCAGCAGGGTCAACGGCCTGGTGGCAGGCGTGCAGGTGGTGCTCCTGTCCAGCAACCCCAGCAGCCCATTCCTATGATGCAGCAGCAGATGCTGCCAAGGGGACGTTATCGCTACCCCCCAGCACGTGGGCTGCCAGATGCTCCTATCCCAGGTGTTACTGGAGGTGTGCTTCCTGGTGTTCAATATGACATGGGTGGAGTGCAAATTCGTGACCTGTCTCCAACTGTGCCTGTTGGCACTTTGGCTACCCTGCTTGCTAATGCTACTCCTGAGCAGCAGAGGCTGCTTTTGGGAGAGAACCTGTATCCGTTGGTGGAGCAGTTGGAGCCGGAAATGGCAGCTAAAGTGACTGGAATGCTGCTTGAGATGGACCAAACTGAAGTACTCCACTTGCTGGAGTCTCCAGATGCACTGAAGGCCAAGGTTGCCGAGGCCATGGAAGTCTTGAGGAATGTCGCTCAGCAACAACAGCAGCAGCAGCAACCGCCGAGCAACCCTGCTGACCAGCTTGCTGCCTTGTCATTGAATGACAACCTATCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_71345.p1 GENE.R_Transcript_71345~~R_Transcript_71345.p1 ORF type:complete len:659 (+),score=191.92,RRM_1|PF00076.18|2e-19,RRM_1|PF00076.18|1.1e-21,RRM_1|PF00076.18|3.2e-24,RRM_1|PF00076.18|8.7e+03,RRM_1|PF00076.18|8.6e-20,RRM_6|PF14259.2|5.3e-09,RRM_6|PF14259.2|4.5e-12,RRM_6|PF14259.2|9e-16,RRM_6|PF14259.2|1.3e-12,RRM_5|PF13893.2|1e-05,RRM_5|PF13893.2|3.1e-09,RRM_5|PF13893.2|5.5e-08,RRM_5|PF13893.2|9.6e-06,PABP|PF00658.14|8.8e+02,PABP|PF00658.14|4.4e-26,RRM_occluded|PF16842.1|2.1e+02,RRM_occluded|PF16842.1|27,RRM_occluded|PF16842.1|0.0032,RRM_occluded|PF16842.1|0.0021,Nup35_RRM|PF05172.9|4.2e+02,Nup35_RRM|PF05172.9|0.014,Nup35_RRM|PF05172.9|49,Nup35_RRM|PF05172.9|20,RRM_7|PF16367.1|10,RRM_7|PF16367.1|0.27,RRM_7|PF16367.1|18,RRM_7|PF16367.1|5.4e+02,Nup35_RRM_2|PF14605.2|8.1e+02,Nup35_RRM_2|PF14605.2|0.82,Nup35_RRM_2|PF14605.2|13,Nup35_RRM_2|PF14605.2|7,RRM_3|PF08777.7|1.1e+03,RRM_3|PF08777.7|0.21,RRM_3|PF08777.7|0.94,RRM_3|PF08777.7|19,RRM_3|PF08777.7|4.9e+03 R_Transcript_71345:658-2634(+)
MAQVQLQPNGAVVGPTAAGAGGGGSTGGPQFVTVSLYVGDLDWNVTDSQLYDLFNQVGQVQSVRVCRDLTTRRSLGYGYVNYSSHPDAARAIEVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDNKALHETFSSFGNILSCKVATDASGQSKGYGFVQYDNEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERENFTDKTRFTNVFVKNLAESTTDEDLNNTFSQYGKITSAVVMRDVDGKSKCFGFVNFEDADDAAKAVEALNGQKFDDKEWFVGKAQKKAEREAELKHRFEQSMKEAVDKYQGTNLYIKNLDDTIDDEKLRELFAQFGTITSCKVMRDPTGVSKGSGFVAFSTAEEASRALMEMNGKMIVSKPLYVALAQRKEDRRARLQAQFSQMRTVAMPSSAAPRMPMYPPGGPGLGGQLYYGQAPPAIIPPQPAFGYQHQLMPGMRGGAPVPNFFVPMVQQGQQGQRPGGRRAGGAPVQQPQQPIPMMQQQMLPRGRYRYPPARGLPDAPIPGVTGGVLPGVQYDMGGVQIRDLSPTVPVGTLATLLANATPEQQRLLLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNVAQQQQQQQQPPSNPADQLAALSLNDNLS*

Click here to download the sequence:
Link to NCBI Protein BLAST