Transcript Information: R_Transcript_71397.p1


Annotated TAIR IDAT5G18950.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6328519-6329970 | Reverse length=483
E-Value2.6E-119
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.9723169557824
Replicate 24.752540972608
Replicate 37.3518245663327
Condition 2: 8 Hour
Replicate 16.8246076288775
Replicate 27.2899496543054
Replicate 312.785847345779
Condition 3: 24 Hour
Replicate 19.4623394654726
Replicate 28.4942551132629
Replicate 310.130457912517


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_71397.p1 GENE.R_Transcript_71397~~R_Transcript_71397.p1 ORF type:complete len:592 (+),score=108.53,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|8.6e-07,PPR_2|PF13041.2|5.4e-06,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|7.8e-12,PPR_2|PF13041.2|1.9e-12,PPR_2|PF13041.2|1.6e-15,PPR_2|PF13041.2|7.2e-11,PPR_2|PF13041.2|9.6e-08,PPR_2|PF13041.2|0.00028,PPR_2|PF13041.2|0.52,PPR_1|PF12854.3|3.8e+02,PPR_1|PF12854.3|4.1,PPR_1|PF12854.3|1.9e+03,PPR_1|PF12854.3|95,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|0.47,PPR_1|PF12854.3|1.8e-06,PPR_1|PF12854.3|5.1e-06,PPR_1|PF12854.3|9.9e-13,PPR_1|PF12854.3|5.6e-08,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.0093,PPR_1|PF12854.3|51,PPR_1|PF12854.3|5.9e+03,PPR|PF01535.16|7.3e+03,PPR|PF01535.16|1.6,PPR|PF01535.16|0.11,PPR|PF01535.16|3.2e+02,PPR|PF01535.16|20,PPR|PF01535.16|0.95,PPR|PF01535.16|8.7e-06,PPR|PF01535.16|0.00073,PPR|PF01535.16|3.5e-10,PPR|PF01535.16|0.00058,PPR|PF01535.16|0.31,PPR|PF01535.16|0.0023,PPR|PF01535.16|1.1,PPR_3|PF13812.2|8.2,PPR_3|PF13812.2|3.7,PPR_3|PF13812.2|13,PPR_3|PF13812.2|3e+03,PPR_3|PF13812.2|8.4e+02,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|1.3e-05,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|55,PPR_3|PF13812.2|53 R_Transcript_71397:1144-2919(+)
ATGGCAAAGCCCCTATCTTTCATCTTCACCCCTTTCTACAAAAACCCTAAACCCTCTTTCGTGTTTAAAGTTCGAAACTTTACGATGGGTATAGAGAATCAGGACCAACAACAGCTGAAAAAGATTGCTGCGGAAGTTGCTGAGATCATTAGAACCAGACCCAGATGGGAAAGCACACTCCTTTCGAACTTCCCATCACTCAATTTTATTGACCCCAATTTCTACAATGAGGTACTTAAACTTCAAGACAATGCCTTTCTTAATCTTCGTTTCTTCAATTGGCTTACTTCCCTATCTGGATTTTCCCCTGACCCCATTTCTTGCAATTCATTGTTTGTATCCCTTGTGAAATCTAAGGCTTCTGTTGTTGCAAAATCATTCCTTGATTCTGTTCCTCAGTTTAGCCCTGACCCAGATTGTTTAGAGTCTTTGATTTGTTGTTTATTTGAGGATGGTTATGTTGATGAAGCCCTTGATTTGATTGGAAAGTTGAAACCCTTAGGGGTTTTTTGCCCATCAATTATGACTTGGAATTCGGCTTTATGTGGGGCAGTTCGAGTTAAGAGGACTGATATTGTTTGGAAATTGTATGGGGAGATGATTGATAGTGGGGTTGGTGCTGATGTTGAGACTCTTGGACATTTGATTCAGGCATTTTGTGTTGAGATCAATGTAGAAAGAGGCTATGAACTTGTTCTTCAAGTTCGGGATGGTGGTGTTGCTCCTAGTAAGGTTGCCTTGAATAGATTGATATGTGAGCTCTCTAAGAGTGGGAACTATGGTAGGGTTTCGGAGCTTTTGCATTTTATGATTGCAAGGAATCAAAACCCAGATATTTATACTTATCAAGGGGTCATCTATGGGCTTTGCAAGAGAAGGAAAGAGGTTGAAGGGTATCGGATATTTAACGCCCTAAAGACTAGAGGGTATGTTCCTGATAGGGTGATGTACACAACTATGATTCATGGGCTTTGTCAGATGAGATGGCTTGGGGAAGCTAGGAAGTTGTGGTTTGAAGTGATGAGCAAGGGTATAATCCCGAATGAGTATACTTATAATGTGCTTATTCATGGGTATTTCACGATCCATGCTCTCGAAGAGGCTTGGAACTTGCATAGGGAGATGTGCAATCGAGGGTATAAGCTAACCACTGTGACTTACAATACCTTGATTGGTGGATTGTGCAAGAATAGGAAGGTGCATGAAGCTTGCAGTTTGTTTGAAGAAATGGCCCAGAATGGGGTTGCTCGTGATGTGATCACATATAATACTCTTATTTTAGGTGTTTGCAAGCAAGGAGACTTAGCTAAGGGTATGATGCTCCTTGAAGAGCTTGTGGTTCAGGGTTTGCAGCCATCAACGTCATCTTATTCCCCTCTCATTGAACAGCTTTGTCAGGTTGGAAGCACGCAGCAAGCTTTGCAGTTGTGGACAAATATGGTTAATAAGGGTTTGGAACCTTCAATTTGCAGCCATGAGTGTATCATAACTGGCTTTTGCAAGGAAGGATTACCCATCGAAGGCATGCAGTGGTTGTCTGAAATGTTAGATAGGAAACTTGTTCCGCGGAAGGGAACTTTTGAGACGCTGATACAACGCCTTTCTCAGCAAGATAAGCTGGATGCTGCTCTTTTTGTTTTACAGTCTATGTTACGTATAGGTTATGTGTTCGGAGAAATTGTTTGTTCTTCCCTTGTTAGTAAACTTTGTAATGATAGTTTGGATGACATGGAGACAAGTCTCCAAGATGTCATATCCATCACACCAAGTTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_71397.p1 GENE.R_Transcript_71397~~R_Transcript_71397.p1 ORF type:complete len:592 (+),score=108.53,PPR_2|PF13041.2|1.1e+02,PPR_2|PF13041.2|2.7,PPR_2|PF13041.2|8.6e-07,PPR_2|PF13041.2|5.4e-06,PPR_2|PF13041.2|2.8e-07,PPR_2|PF13041.2|7.8e-12,PPR_2|PF13041.2|1.9e-12,PPR_2|PF13041.2|1.6e-15,PPR_2|PF13041.2|7.2e-11,PPR_2|PF13041.2|9.6e-08,PPR_2|PF13041.2|0.00028,PPR_2|PF13041.2|0.52,PPR_1|PF12854.3|3.8e+02,PPR_1|PF12854.3|4.1,PPR_1|PF12854.3|1.9e+03,PPR_1|PF12854.3|95,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|0.47,PPR_1|PF12854.3|1.8e-06,PPR_1|PF12854.3|5.1e-06,PPR_1|PF12854.3|9.9e-13,PPR_1|PF12854.3|5.6e-08,PPR_1|PF12854.3|0.012,PPR_1|PF12854.3|0.0093,PPR_1|PF12854.3|51,PPR_1|PF12854.3|5.9e+03,PPR|PF01535.16|7.3e+03,PPR|PF01535.16|1.6,PPR|PF01535.16|0.11,PPR|PF01535.16|3.2e+02,PPR|PF01535.16|20,PPR|PF01535.16|0.95,PPR|PF01535.16|8.7e-06,PPR|PF01535.16|0.00073,PPR|PF01535.16|3.5e-10,PPR|PF01535.16|0.00058,PPR|PF01535.16|0.31,PPR|PF01535.16|0.0023,PPR|PF01535.16|1.1,PPR_3|PF13812.2|8.2,PPR_3|PF13812.2|3.7,PPR_3|PF13812.2|13,PPR_3|PF13812.2|3e+03,PPR_3|PF13812.2|8.4e+02,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|1.3e-05,PPR_3|PF13812.2|0.026,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|55,PPR_3|PF13812.2|53 R_Transcript_71397:1144-2919(+)
MAKPLSFIFTPFYKNPKPSFVFKVRNFTMGIENQDQQQLKKIAAEVAEIIRTRPRWESTLLSNFPSLNFIDPNFYNEVLKLQDNAFLNLRFFNWLTSLSGFSPDPISCNSLFVSLVKSKASVVAKSFLDSVPQFSPDPDCLESLICCLFEDGYVDEALDLIGKLKPLGVFCPSIMTWNSALCGAVRVKRTDIVWKLYGEMIDSGVGADVETLGHLIQAFCVEINVERGYELVLQVRDGGVAPSKVALNRLICELSKSGNYGRVSELLHFMIARNQNPDIYTYQGVIYGLCKRRKEVEGYRIFNALKTRGYVPDRVMYTTMIHGLCQMRWLGEARKLWFEVMSKGIIPNEYTYNVLIHGYFTIHALEEAWNLHREMCNRGYKLTTVTYNTLIGGLCKNRKVHEACSLFEEMAQNGVARDVITYNTLILGVCKQGDLAKGMMLLEELVVQGLQPSTSSYSPLIEQLCQVGSTQQALQLWTNMVNKGLEPSICSHECIITGFCKEGLPIEGMQWLSEMLDRKLVPRKGTFETLIQRLSQQDKLDAALFVLQSMLRIGYVFGEIVCSSLVSKLCNDSLDDMETSLQDVISITPSS*

Click here to download the sequence:
Link to NCBI Protein BLAST