Transcript Information: R_Transcript_716.p1


Annotated TAIR IDAT4G35800.1
Annotated Gene NameRNA polymerase II large subunit
Annotated Gene Symbol(s)NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_I
Annotation TypeOrtholog
Chromosome Positionchr4:16961115-16967892 | Reverse length=1839
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 134.661475827321
Replicate 220.14995589372
Replicate 326.511607952256
Condition 2: 8 Hour
Replicate 129.055838637013
Replicate 232.905439042937
Replicate 339.70101030776
Condition 3: 24 Hour
Replicate 142.708366952035
Replicate 230.835955555462
Replicate 338.602611137466


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_716.p1 GENE.R_Transcript_716~~R_Transcript_716.p1 ORF type:3prime_partial len:1811 (+),score=374.64,RNA_pol_Rpb1_1|PF04997.8|6.1e-111,RNA_pol_Rpb1_5|PF04998.13|2e-107,RNA_pol_Rpb1_2|PF00623.16|9e+03,RNA_pol_Rpb1_2|PF00623.16|4.4e-72,RNA_pol_Rpb1_6|PF04992.10|4e-67,RNA_pol_Rpb1_7|PF04990.8|5.3e-54,RNA_pol_Rpb1_3|PF04983.14|8.2e+03,RNA_pol_Rpb1_3|PF04983.14|4.4e-51,RNA_pol_Rpb1_4|PF05000.13|2.1e-39,RNA_pol_Rpb1_R|PF05001.9|9.5e+03,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|81,RNA_pol_Rpb1_R|PF05001.9|0.0016,RNA_pol_Rpb1_R|PF05001.9|0.18,RNA_pol_Rpb1_R|PF05001.9|0.018,RNA_pol_Rpb1_R|PF05001.9|0.33,RNA_pol_Rpb1_R|PF05001.9|1.3,RNA_pol_Rpb1_R|PF05001.9|0.013,RNA_pol_Rpb1_R|PF05001.9|0.018,RNA_pol_Rpb1_R|PF05001.9|0.31,RNA_pol_Rpb1_R|PF05001.9|0.31,RNA_pol_Rpb1_R|PF05001.9|0.062,RNA_pol_Rpb1_R|PF05001.9|0.016,RNA_pol_Rpb1_R|PF05001.9|0.32,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|0.034,RNA_pol_Rpb1_R|PF05001.9|4.6,RNA_pol_Rpb1_R|PF05001.9|1.6e+03,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|1.6e+04 R_Transcript_716:2632-8061(+)
ATGGATACGAGGTTCCCGTATTCACCGGCCGAGGTGGCCAAGGTTCACATGATCCAGTTCGGAATCCTCAGCCCCGACGAGATCAGGCAAATGTCGGTGGTGCAAGTGGAGTACAGCGAGACGACGGAGAGGGGGAAGCCGAAGCCGGGGGGTTTGAGTGACCCACGGCTTGGGACCATTGACCGGAAAATGAAGTGTGATACTTGTACTGCCAACATGGCTGAATGTCCCGGTCACTTTGGTCACCTTGAGCTTGCTAAGCCTATGTTTCATATCGGGTTCATGAAGACTGTGCTTAGCATTATGCGTTGCGTTTGCTTTAATTGCTCCAAGATTCTTGCAGATGAGGATGACCATAAATTTAAGCTAGCATTAAAAATCAGAAATCCCAAAAATAGGTTGAAGAGGATCTTGGATGCCTCAAAAAGTAAAAAGAAGTGTGAAGGAGGAGATGAGATAAACATGCAAGGTGAAGATAATGGAGAAGAATCAGTTAAAAAGAGTCGTGGTGGATGTGGTGCTCAGCAGCCAACCTTCACCATCGAAGGTATGAAAATGATTGCTGAGTACAAGATGACAAAGAAAAAGAGTGACGAGCAGGAGCAGCTTCCTGAACCTGTTGAGAGAAAGCAGCAACTTTCTGCTGAAAAGGTGCTTAGTGTTCTCAAGAGGATAAGCGATGAAGACTGCCAAATTCTGGGTTTCAATCCCAAATACGCTCGCCCTGACTGGATGATTCTTCAAGTCCTCCCAATTCCTCCACCTCCTGTGAGACCATCAGTCATGATGGATACCTCTTCGAGGAGTGAGGATGATCTGACCCACCAGTTGGCAATGATAATTCGGCACAATGATAATTTGAGAAGACAAGAGAGGAATGGGGCACCTGCACACATCATCTCAGAGTTTGCACAGTTGCTGCAATTTCATATTGCTACATACTTCGACAACGAGCTTCCTGGACAGCCACGGGCTACACAACGATCAGGTAGACCAATCAAATCGATATGTAGTAGGCTGAAAGCCAAGGAAGGTCGTATTAGGGGCAACTTGATGGGAAAACGAGTGGACTTTTCAGCACGTACTGTCATTACACCAGATCCCACTATTAATATTGATGAATTGGGGGTGCCTTGGAGTATTGCATTGAATCTCACATATCCTGAAACTGTCACTCCTTATAACATTGAAAGGTTGAAAGAGCTTGTTGACAATGGTCCTCATCCTCCTCCTGGAAAAACTGGTGCCAAGTATATAATTAGGGATGACGGACAGAGGCTTGATCTTCGTTATTTGAAGAAGAGTAGTGATCATCATTTGGAGCTTGGTTACAAGGTTGAAAGGCATCTGAATGATGGGGACTTTGTGCTTTTCAACCGACAGCCCAGTCTTCATAAAATGTCCATCATGGGTCATAGAATAAAGATTATGCCCTATTCTACATTTCGTTTGAATTTGTCTGTTACCTCACCGTACAATGCTGATTTTGATGGTGATGAAATGAACATGCACGTGCCACAATCCTTTGAGACTCGAGCAGAAGTTTTGGAGCTAATGATGGTGCCTAAATGTATTGTTTCCCCACAGTCCAACAAGCCTGTTATGGGAATCGTGCAAGATACCCTTTTGGGTTGCCGTAAAATTACGAAGAGGGACACATTTATAGAAAAGGATGTCTTTATGAATATTCTTATGTGGTGGGAGGATTTTGATGGGAAGGTCCCTCAGCCTACTATTTTGAAGCCCAGGCCTATTTGGACAGGAAAACAAGTTTTTAACCTTATCATACCAAAGCAGATAAACTTAATCAGGTTTGCAGCATGGCACCAGGAATCAGAAACAGGGTTTATTACTCCTGGAGATACTAGAGTCCTAGTTGAGAAGGGGGAGTTATTATCTGGCACGCTCTGCAAGAAGACTCTTGGGACATCAAGTGGAAGTCTTATTCATTGCATTTGGGAAGAAGTTGGACCTGATGCAGCTCGCAAATTTCTGGGCCACACTCAGTGGCTTGTTAATTATTGGCTTTTACAGAATGGTTTTAGCATTGGGATTGGGGATACAATTGCTGATGCTGCAACGATGGAGATCATTAATGAGACGATATCTAAGGCTAAAAATGAAGTGAAAAATCTTATAAGGGCTGCACAGGACAAACAGTTGGAGCCTGAGCCTGGACGAACAATGATGGAATCATTTGAAAATAGAGTGAATCAGGTTTTAAACAAAGCTCGTGATGATGCTGGAAGTAGTGCTCAGCGAAGCTTGTCTGAGAGTAACAACCTGAAAGCTATGGTCACTGCAGGTTCCAAAGGAAGTTTCATCAACATATCCCAGATGACTGCTTGTGTGGGCCAGCAGAATGTTGAAGGCAAGCGTATACCTTTTGGTTTTGTTGGTCGAACATTGCCTCATTTCACAAAGGATGATTATGGGCCTGAAAGTCGTGGCTTTGTCGAGAATTCATATCTGAGAGGATTGACTCCCCAGGAGTTTTTTTTCCATGCCATGGGAGGTAGAGAAGGTCTTATTGATACTGCAGTCAAGACTTCTGAGACTGGTTACATTCAGCGTAGATTGGTCAAAGCTATGGAGGATATCATGGTCAAATATGATGGAACAGTGAGGAATTCCCTGGGAGATGTTATTCAGTTTCTTTATGGTGAAGATGGCATGGATGCTGTTTGGATAGAATCTCAGAAGTTGGATTCTCTGAAAATGAAGAAATCCGAATTTGATAAAACGTATAGATATGAGTTTGATGCTGATAACTGGGAGCCAGATTATATGTTGAAAGAACACGTAGATGATCTGAAAACTATTCGTGAGTTCCGTAATGTGTTTGATGCTGAAGTCCAGAAGCTTGAAGCGGATAGATTTCAACTTGCCACTGAAATAGCAACTACTGGTGACAACTCCTGGCCATTGCCTGTTAACCTTAAAAGATTGATTTGGAATGCCCAAAAGACCTTCAAGGTTGACATGCGAGAAAAGTCTGATATGCATCCCATGGAGATTGTGGAAGCCGTAGATAAGCTTCAGGAGAGGTTGAAAGTTGTTCCTGGTGATGATTTTTTGAGTACAGAGGCGCAGAAGAATGCCACTCTCTTCTTCAATATCTTACTTCGAAGTACACTGGCAAGCAAGCGTGTGTTGAAGGAGTTCAAGCTTAACCGTGAAGCATTTGAGTGGGTTATTGGTGAGATAGAGTCTCGTTTTCTGCAGTCACTTGTGGCCCCTGGGGAAATGATTGGCTGTGTTGCTGCCCAGTCAATTGGTGAGCCTGCTACTCAGATGACCCTCAATACTTTCCACTATGCTGGTGTTAGTGCCAAGAATGTCACTCTAGGTGTTCCCCGACTGAAGGAGATCATCAATGTAGCCAAGAAGATAAAAACTCCTTCTCTATCCGTCTTCCTAAAGCCTGATGTTAGTAAGACAAAGGAGAGGGCTAAAACTGTCCAATGTGCTTTAGAATACACTACTCTGCGCAGTGTGACACATGCCACTGAAGTGTGGTATGATCCAGATCCTATGAGCACAATAATCGATGAAGATGTAGACTTTGTCAAGTCATACTATGAAATGCCTGATGAGGAGGTTTCACCTGACAAAATATCTCCATGGCTCCTTCGTATAGAGTTGAATCGTGAGATGATGGTGGATAAGAAGTTGAGCATGGCTGATATTGCAGAGAAGATCAACTTGGAATTTGATGATGATTTGACTTGCATCTTCACTGATGACAATGCAGAGAAGTTGATACTTCGTATCCGTATCATGAATGATGAAGGTCCCAAGGGAGAGCTGCAGGATGAATCTGCTGAAGATGATGTGTTTCTTAAAAAGATTGAGAGCAACATGCTTACTGAAATGGCTCTTAGAGGCATTCCAGATATCAATAAGGTGTTCATTAAACAGGGAAAAGTGAATAAGTTTGACGAAGAGAAAGGATTTAAGGCTGAAACGGAGTGGATGCTCGATACCGAAGGTGTCAACCTTCTGGCGGTTATGTGTCATGAAGATGTTGATTCAACAAGAACAACCAGTAATCACCTGATTGAAGTTATGGAAGTTCTTGGGATTGAAGCTGTTCGTAAAGCCTTGCTGGATGAGTTGAGAGTTGTCATATCCTTCGATGGTTCATATGTGAACTATCGCCATCTGGCCATTTTGTGTGATACGATGACATATCGTGGACATTTGATGGCTATCACCCGTCATGGGATCAATCGGAATGATACTGGGACCTTGATGAGGTGCTCATTTGAAGAAACAGTGGATATACTTCTTGATGCTGCTGTATATGCTGAATCAGACTATTTGAGAGGTGTGACTGAAAATATCATGTTGGGACAGCTTGCTCCGATTGGAACGGGTGGGTGTGCATTATATCTCAATGAGGAGATGTTGCAGCACGCTATTGAACTCCAGCTTCCAAGTTACGTTGAAGGTTTGGAGTTTGGCATGACACCTGCTCGATCCCCTATCTCAGGGACTCCATACCATGATGGTATGATGTCTCCAAGTTACTTGTATAGCCCAAATCTCAGACTCTCACCCAGCACAGATGCTCAGTTTTCTCCATTTGTTGGTGGGATGACCTTCTCTCCAGCTGCATCTCCGTATGCGTCTCCAGGATCGCCAGGATATAGCCCCACTTCACCTGGCTATAGCCCAACTTCGCCTGGTTATAGCCCAACATCTCCAACTTACAGCCCTGGCTCTCCTGGCTACAGTCCGACAAGTCCAGCATATTCACCCACAAGTCCATCTTACTCTCCCACCTCACCCAGCTATAGCCCCACCTCTCCCAGCTACAGCCCCACGTCACCCAGCTACAGCCCCACATCACCCAGCTACAGCCCCACCTCACCAGCCTACAGCCCAACCTCGCCAGCCTACAGCCCTACGTCACCAGCATACAGCCCTACCTCTCCATCCTACAGTCCAACCTCTCCATCATATAGCCCTACATCACCTTCGTACAGCCCGACTTCACCATCATACAGTCCCACATCACCATCCTATAGTCCCACATCCCCCTCTTACAGTCCGACATCACCAGCATACAGTCCGACATCTCCTGGATATAGTCCTACATCTCCGAGTTATAGTCCCACTTCACCTAGTTACAGCCCTACATCTCCAAGCTATAATCCATCAGCCAAGTACAGTCCCTCGCTTGCATACTCTCCAAGCAGTCCAAGAATATCACCATCTAGTCCTTACAGTCCAACTTCTCCAAATTACAGCCCAACATCGCCATCATACTCACCAACATCACCATCTTATTCGCCATCAAGCCCAAGCTATAGTCCAAGCAGTCCCTACAATTCCGGTCCAAGTCCGGATTATAGCCCAAGTTCTCCACAGTACAGTCCAAGTGCAGGGTATTCCCCTAGCGCTCCAGGTTACTCACCATCATCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_716.p1 GENE.R_Transcript_716~~R_Transcript_716.p1 ORF type:3prime_partial len:1811 (+),score=374.64,RNA_pol_Rpb1_1|PF04997.8|6.1e-111,RNA_pol_Rpb1_5|PF04998.13|2e-107,RNA_pol_Rpb1_2|PF00623.16|9e+03,RNA_pol_Rpb1_2|PF00623.16|4.4e-72,RNA_pol_Rpb1_6|PF04992.10|4e-67,RNA_pol_Rpb1_7|PF04990.8|5.3e-54,RNA_pol_Rpb1_3|PF04983.14|8.2e+03,RNA_pol_Rpb1_3|PF04983.14|4.4e-51,RNA_pol_Rpb1_4|PF05000.13|2.1e-39,RNA_pol_Rpb1_R|PF05001.9|9.5e+03,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|81,RNA_pol_Rpb1_R|PF05001.9|0.0016,RNA_pol_Rpb1_R|PF05001.9|0.18,RNA_pol_Rpb1_R|PF05001.9|0.018,RNA_pol_Rpb1_R|PF05001.9|0.33,RNA_pol_Rpb1_R|PF05001.9|1.3,RNA_pol_Rpb1_R|PF05001.9|0.013,RNA_pol_Rpb1_R|PF05001.9|0.018,RNA_pol_Rpb1_R|PF05001.9|0.31,RNA_pol_Rpb1_R|PF05001.9|0.31,RNA_pol_Rpb1_R|PF05001.9|0.062,RNA_pol_Rpb1_R|PF05001.9|0.016,RNA_pol_Rpb1_R|PF05001.9|0.32,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|0.034,RNA_pol_Rpb1_R|PF05001.9|4.6,RNA_pol_Rpb1_R|PF05001.9|1.6e+03,RNA_pol_Rpb1_R|PF05001.9|1.6e+04,RNA_pol_Rpb1_R|PF05001.9|1.6e+04 R_Transcript_716:2632-8061(+)
MDTRFPYSPAEVAKVHMIQFGILSPDEIRQMSVVQVEYSETTERGKPKPGGLSDPRLGTIDRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHKFKLALKIRNPKNRLKRILDASKSKKKCEGGDEINMQGEDNGEESVKKSRGGCGAQQPTFTIEGMKMIAEYKMTKKKSDEQEQLPEPVERKQQLSAEKVLSVLKRISDEDCQILGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPIWTGKQVFNLIIPKQINLIRFAAWHQESETGFITPGDTRVLVEKGELLSGTLCKKTLGTSSGSLIHCIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEIINETISKAKNEVKNLIRAAQDKQLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKTYRYEFDADNWEPDYMLKEHVDDLKTIREFRNVFDAEVQKLEADRFQLATEIATTGDNSWPLPVNLKRLIWNAQKTFKVDMREKSDMHPMEIVEAVDKLQERLKVVPGDDFLSTEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKKIKTPSLSVFLKPDVSKTKERAKTVQCALEYTTLRSVTHATEVWYDPDPMSTIIDEDVDFVKSYYEMPDEEVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFTDDNAEKLILRIRIMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQGKVNKFDEEKGFKAETEWMLDTEGVNLLAVMCHEDVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGTLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNEEMLQHAIELQLPSYVEGLEFGMTPARSPISGTPYHDGMMSPSYLYSPNLRLSPSTDAQFSPFVGGMTFSPAASPYASPGSPGYSPTSPGYSPTSPGYSPTSPTYSPGSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYSPSLAYSPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYNSGPSPDYSPSSPQYSPSAGYSPSAPGYSPSS

Click here to download the sequence:
Link to NCBI Protein BLAST