Transcript Information: R_Transcript_718.p1


Annotated TAIR IDAT5G60040.2
Annotated Gene Namenuclear RNA polymerase C1
Annotated Gene Symbol(s)NRPC1
Annotation TypeOrtholog
Chromosome Positionchr5:24173590-24183269 | Forward length=1391
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.418436778577
Replicate 29.8054570125967
Replicate 310.815204554195
Condition 2: 8 Hour
Replicate 110.375975028965
Replicate 212.40996154969
Replicate 313.640323230129
Condition 3: 24 Hour
Replicate 113.347170917573
Replicate 210.219152213229
Replicate 313.158297539044


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_718.p1 GENE.R_Transcript_718~~R_Transcript_718.p1 ORF type:complete len:1364 (+),score=291.23,RNA_pol_Rpb1_1|PF04997.8|3.8e-111,RNA_pol_Rpb1_5|PF04998.13|1.1e-84,RNA_pol_Rpb1_2|PF00623.16|5.3e+03,RNA_pol_Rpb1_2|PF00623.16|2.1e-72,RNA_pol_Rpb1_3|PF04983.14|4.4e+03,RNA_pol_Rpb1_3|PF04983.14|7.8e-31,RNA_pol_Rpb1_3|PF04983.14|3.8e+03,RNA_pol_Rpb1_4|PF05000.13|1.5e+04,RNA_pol_Rpb1_4|PF05000.13|1.4e-29 R_Transcript_718:2632-6723(+)
ATGGATACGAGGTTCCCGTATTCACCGGCCGAGGTGGCCAAGGTTCACATGATCCAGTTCGGAATCCTCAGCCCCGACGAGATCAGGCAAATGTCGGTGGTGCAAGTGGAGTACAGCGAGACGACGGAGAGGGGGAAGCCGAAGCCGGGGGGTTTGAGTGACCCACGGCTTGGGACCATTGACCGGAAAATGAAGTGTGATACTTGTACTGCCAACATGGCTGAATGTCCCGGTCACTTTGGTCACCTTGAGCTTGCTAAGCCTATGTTTCATATCGGGTTCATGAAGACTGTGCTTAGCATTATGCGTTGCGTTTGCTTTAATTGCTCCAAGATTCTTGCAGATGAGGATGACCATAAATTTAAGCTAGCATTAAAAATCAGAAATCCCAAAAATAGGTTGAAGAGGATCTTGGATGCCTCAAAAAGTAAAAAGAAGTGTGAAGGAGGAGATGAGATAAACATGCAAGGTGAAGATAATGGAGAAGAATCAGTTAAAAAGAGTCGTGGTGGATGTGGTGCTCAGCAGCCAACCTTCACCATCGAAGGTATGAAAATGATTGCTGAGTACAAGATGACAAAGAAAAAGAGTGACGAGCAGGAGCAGCTTCCTGAACCTGTTGAGAGAAAGCAGCAACTTTCTGCTGAAAAGGTGCTTAGTGTTCTCAAGAGGATAAGCGATGAAGACTGCCAAATTCTGGGTTTCAATCCCAAATACGCTCGCCCTGACTGGATGATTCTTCAAGTCCTCCCAATTCCTCCACCTCCTGTGAGACCATCAGTCATGATGGATACCTCTTCGAGGAGTGAGGATGATCTGACCCACCAGTTGGCAATGATAATTCGGCACAATGATAATTTGAGAAGACAAGAGAGGAATGGGGCACCTGCACACATCATCTCAGAGTTTGCACAGTTGCTGCAATTTCATATTGCTACATACTTCGACAACGAGCTTCCTGGACAGCCACGGGCTACACAACGATCAGGTAGACCAATCAAATCGATATGTAGTAGGCTGAAAGCCAAGGAAGGTCGTATTAGGGGCAACTTGATGGGAAAACGAGTGGACTTTTCAGCACGTACTGTCATTACACCAGATCCCACTATTAATATTGATGAATTGGGGGTGCCTTGGAGTATTGCATTGAATCTCACATATCCTGAAACTGTCACTCCTTATAACATTGAAAGGTTGAAAGAGCTTGTTGACAATGGTCCTCATCCTCCTCCTGGAAAAACTGGTGCCAAGTATATAATTAGGGATGACGGACAGAGGCTTGATCTTCGTTATTTGAAGAAGAGTAGTGATCATCATTTGGAGCTTGGTTACAAGGTTGAAAGGCATCTGAATGATGGGGACTTTGTGCTTTTCAACCGACAGCCCAGTCTTCATAAAATGTCCATCATGGGTCATAGAATAAAGATTATGCCCTATTCTACATTTCGTTTGAATTTGTCTGTTACCTCACCGTACAATGCTGATTTTGATGGTGATGAGATGAATATGCATGTCCCACAGACAGAGGAGGCACGAGCAGAGGCTTTAATGTTAATGGGGGTGCAGAACAACCTTTGTACACCCAAAAATGGAGCCATTTTGGTTGCTTCCACACAAGATTTCTTGACATCTTCTTATCTAATTACAAGGAAGGACACATTTTATGATCGTGCAACATTCTCACTATTGTGTTCTTATATGGGAGATGGAATGGATATGATTGATTTACCAGCACCAGCTTTGATTAAGCCAATTGAGCTCTGGACGGGTAAACAGCTGTTTAATGTTCTGTTGCGTCCACATGCAAAAATGAGAGTGTTTGTAAATCTTATGGTCAAGGAAAAGATTTATTCCAGACCTGAAGACAGAAAGACAACATGTAGGGAAGAAACCATGTGTCCAAATGATGGTTTTGTTTATTTCCGCAACAGTGAGTTGATATGTGGGCAACTTGGAAAGAGTACTTTAGGGAATGGAAATAAGGTTGGTCTTTTCTCTGTTCTTCTTCGAGATTATAATGCGCATGCTGCTGCTGCTTGCATGAACCGGGTGGCAAAGTTAAGTGCTAGATGGATCGGTAATCATGGGTTTTCAATTGGTATTGATGATGTTCAACCTGGGAAACTACTGAATGAACAGAAAAGACTCAGAATATTGGAAGGATACCAAGAGTGTGATAGGTCAATACAGTCCTACAACGAGGGCAAGCTCACCCTTATGCCTGGTTGTGATGCAGCCCAAACACTGGAGGCGAAGATAACCGAAAAATTAAATGAAATTCGTGAAATAGCTGGAAAGGTTTGTATGAAAGAACTTCACTGGAGGAATAGCCCGTTAATAATGTCACAGTGTGGTTCCAAAGGATCACCAATCAACATCAGCCAAATGGTTGCTTGTGTGGGTCAGCAAGCAGTTGGAGGGCGCCGAGCTCCAGATGGTTTCATTGATCGCAGTCTACCCCATTTTCCTAGAAAATCAAAAACTCCTGCTGCAAAGGGATTTGTTCCTAATTCCTTCTATAGCGGCTTGACAGCCACTGAATTTTTTTTTCATACAATGGGCGGGCGAGAAGGTCTTGTGGATACAGCTGTGAAAACTGCAGAGACTGGGTATATGTCGCGTAGACTGATGAAATTTTTGGAGGACCTAGCCATTTACTATGACATGACTGTACGAACTTCAAGTGGAATTATTGTTCAATTTCGATATGGTGATGATGGGATGGATCCTGCTCAAATGGAAGGATCGCAAGGATTTCCTGTGGACCTTGAGAGGTTGCTTTTCAAAGTAGAGGCTACTTGTCCTGCTGGAGGAAATGTAAAGCTATCGCCTTCAGAAACATCTAATCTGATAAATAAGAGGCTGTCGGAATACAATTTGAATTCTGATGGTGGTTGTGCTGATGCCTTCAAGGAAAAGTTGTTCGAGTTCTTTGACAAACTAGCTAAAAGAAAATATCATGTAACTGCACAACAGCTAAAGGTATTTTTGGATGCTTGCATTTCTCGTCTTCGTTCAAAAGGGATTGAAGCTGGAACGGCAATTGGAGCAATTGGAGCTCAAAGTATTGGGGAACCAGGCACACAAATGACTTTGAAAACTTTCCATTTTGCTGGAGTTGCCAGCATGAATGTTACCCTTGGAGTTCCTCGTATTAAAGAAATTATAGATGCACGCAAAAACATAAGTACTCCAATTATTATGGCAAAACTTGAGAATGATAACAATATGGAGATCGCACAGAAGGTAAAAGGTCGAATTGAGAAGACAATGTTGGGCCAGGTGGCAAAGAGTATCAAGCTTGAAATGACAATGGTTAAAATATCGGTGGTTGTTAAGCTTGATCTAGCTAAAATCAATGCTTTACGGCTTTTTATAGATGCTTACACAGTTCAACCCAAAATTGAAAAGACATTGAAAAAGTTCAAGGAAAGTAAAGCGAATGTTAAAGCTCTTGATACTAGGAAGCTGGTTATCACTACAAATGCCAATAGAAATATTGGTCATTTTGTAATTCACCGACTTAAAAATATATTGGCCACAGTTGCTATTAAGGGTATAGATACTGTTGAAAGGGCAATTATTGCGGATGAGGAAGGGAAAAAGGGAAAGCTTAACCTGATTGTCGAGGGAACTGGTTTTCTGGAGGTCATGGGGATTCAGGGAATCAATGGACAGGAGACAGAGAGCAATCATGTTATTGAAGTGTACAAAACACTTGGGATAGAAGCTGCACGGATCTGTATAATCAAGGAGATTAAAAAGGTCATGCAAAGTCATTCCATGGATATAGACATACGGCATATGATGCTTCTTGCAGATTTGATGACATATAAGGGGGATGTTCTACCTGTTACAAGAGTTGGAATGTCAAAAATGAAGGAAAGTATTTTGATGTTGGCATCTTTTGAGAAAACTGCTGATCATCTTTTTAATGCTGCTGTAAGTGGGAGGGAAGACCTTATTGGAGGAGTTACTGAGTGCATCATTATGGGCATACCTATGCAGATTGGCACGGGTATGCTTAAAATTTTGCAGAGAACTGATCCACTGCCGGTGTATAGAAATGCATCAAATCCTATTATCTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_718.p1 GENE.R_Transcript_718~~R_Transcript_718.p1 ORF type:complete len:1364 (+),score=291.23,RNA_pol_Rpb1_1|PF04997.8|3.8e-111,RNA_pol_Rpb1_5|PF04998.13|1.1e-84,RNA_pol_Rpb1_2|PF00623.16|5.3e+03,RNA_pol_Rpb1_2|PF00623.16|2.1e-72,RNA_pol_Rpb1_3|PF04983.14|4.4e+03,RNA_pol_Rpb1_3|PF04983.14|7.8e-31,RNA_pol_Rpb1_3|PF04983.14|3.8e+03,RNA_pol_Rpb1_4|PF05000.13|1.5e+04,RNA_pol_Rpb1_4|PF05000.13|1.4e-29 R_Transcript_718:2632-6723(+)
MDTRFPYSPAEVAKVHMIQFGILSPDEIRQMSVVQVEYSETTERGKPKPGGLSDPRLGTIDRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHKFKLALKIRNPKNRLKRILDASKSKKKCEGGDEINMQGEDNGEESVKKSRGGCGAQQPTFTIEGMKMIAEYKMTKKKSDEQEQLPEPVERKQQLSAEKVLSVLKRISDEDCQILGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQTEEARAEALMLMGVQNNLCTPKNGAILVASTQDFLTSSYLITRKDTFYDRATFSLLCSYMGDGMDMIDLPAPALIKPIELWTGKQLFNVLLRPHAKMRVFVNLMVKEKIYSRPEDRKTTCREETMCPNDGFVYFRNSELICGQLGKSTLGNGNKVGLFSVLLRDYNAHAAAACMNRVAKLSARWIGNHGFSIGIDDVQPGKLLNEQKRLRILEGYQECDRSIQSYNEGKLTLMPGCDAAQTLEAKITEKLNEIREIAGKVCMKELHWRNSPLIMSQCGSKGSPINISQMVACVGQQAVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVPNSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKFLEDLAIYYDMTVRTSSGIIVQFRYGDDGMDPAQMEGSQGFPVDLERLLFKVEATCPAGGNVKLSPSETSNLINKRLSEYNLNSDGGCADAFKEKLFEFFDKLAKRKYHVTAQQLKVFLDACISRLRSKGIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIDARKNISTPIIMAKLENDNNMEIAQKVKGRIEKTMLGQVAKSIKLEMTMVKISVVVKLDLAKINALRLFIDAYTVQPKIEKTLKKFKESKANVKALDTRKLVITTNANRNIGHFVIHRLKNILATVAIKGIDTVERAIIADEEGKKGKLNLIVEGTGFLEVMGIQGINGQETESNHVIEVYKTLGIEAARICIIKEIKKVMQSHSMDIDIRHMMLLADLMTYKGDVLPVTRVGMSKMKESILMLASFEKTADHLFNAAVSGREDLIGGVTECIIMGIPMQIGTGMLKILQRTDPLPVYRNASNPIIS*

Click here to download the sequence:
Link to NCBI Protein BLAST