Transcript Information: R_Transcript_72131.p1


Annotated TAIR IDAT3G11964.1
Annotated Gene NameRNA binding;RNA binding
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:3793957-3806626 | Reverse length=1896
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.112563951518
Replicate 28.0523446041
Replicate 39.7467992536624
Condition 2: 8 Hour
Replicate 110.205578119333
Replicate 211.953282458883
Replicate 313.12343788837
Condition 3: 24 Hour
Replicate 112.813113096875
Replicate 210.547676294828
Replicate 313.728847025832


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_72131.p1 GENE.R_Transcript_72131~~R_Transcript_72131.p1 ORF type:complete len:1953 (+),score=461.67,S1|PF00575.19|77,S1|PF00575.19|39,S1|PF00575.19|1.3,S1|PF00575.19|1.3e-06,S1|PF00575.19|0.0024,S1|PF00575.19|5.7,S1|PF00575.19|7.2e-06,S1|PF00575.19|11,S1|PF00575.19|1.5e+04,S1|PF00575.19|0.0042,S1|PF00575.19|1.9,S1|PF00575.19|7.5e-07,S1|PF00575.19|0.024,S1|PF00575.19|6.2e-18,Suf|PF05843.10|2.4e+03,Suf|PF05843.10|0.0029,Suf|PF05843.10|1.4e-08 R_Transcript_72131:131-5860(+)
ATGGCGGCGATATCGAACAACAAGAAAAGAAAGTCAAGAGACAACAAACCTTCATCAAATTCTTCCAACGATAATAACAACACTAACGAATCCAATTCACAGTCTCTTCAATTCGACGACGATGTTCCTGACTTCCCTAGAGGAGGGGGAAGTAAGTTGAGTCGAGCAGAGAGACAGGAACTCAGAGAAGAAGTTGATATTGAGTTCGATGCTCAAGAGAGATATTCGAAGAGGAAGAAAGGTAGAGGTTCCAAAATGAATGGAAAATCAACGAGTGAAGATGATTTTGGTTCGCTCTTCGGGGAGGGGATTACAGGCAAGCTACCGAGATTTGCTAATAAGATTACTTTGAAGAACATTTCTCCTGGAATGAAGTTGTGGGGAGTGATTTCAGAGGTTAATGAGAAGGATCTTGCTGTTAGTCTTCCTGGGGGCTTACGAGGATTAGTTCGTGCTACTGAAGCGGTGGAGCCTGTTGTACTAGATTCTATCCAGGATGTAGAGGGCCATTTACTCTCTAAGTTATTTTATGTCGGGCAGCTTGTATCTTGTATTGTGTTGCAAGTGGATGATGACAAAAAAGAGACAGGAAAAAGGAAGGTTTGGCTTTCTTTGCGTCTCTCCCTATTGCACAAGGGCTACAACTTGGATGCTGTTCAAGAAGGGATGGTTTTGACTGCTTTTGTGAAAAGCATTGAAGATCATGGTTACATTCTTCATTTTGGATTGCCTTCTTTTACTGGATTTTCGCCAAAGACAAGTGAGGAAGATGCTAGGGAGGTGATTGTGGGTCAGCTTGTGCAGGGGGTTGTCAGGAGTATTGATAAAACTCGGAAAATTGTTTATTTGGCTTCTGACACTGCTATGGTGTCTAAATGCGTGACTAAAGACCTTAAGGGTATCTCGCTTGATCTTCTTGTTCCAGGCATGATGGTTAATGCTCGAATACAATCCACACTCGAAAATGGGGTCTTGTTATCATTCCTAACTTATTTCACTGGAACTGCTGATATATTTCACTTGGAAAGCGCACGTGTTGCAGCTGACTGGAAAAAACAATATGACAAAAATAAAAAGGTCAATGCTCGCATCCTCTTCATTGATCCATCAACCAGGGCCGTTGGTTTGACCATGAATCCTCACCTCCTTCTCAACAAGTCTCCTCCTTCGCTTGTGAAGACAGGGGAGATTTATGATCACTCAAAAATTATTAGAGTAGATAGGGGCTTTGGCCTTTTGCTTGAAATCCCATCTCTTCCATCACCCACTCCTGCATACGTGCCAGTTTGTGATGTAGCCGATGAAGAAGTCAGTAAGCTTGAGAGGAAATTCAAGGAAGGGAGCGACGTTCGAGCAAGAGTACTTGGGTTTAGGCACTTGGAAGGACTTGCTATGTGTGTTCTTAAGGCCAGTGCATTTGAAGGTGCAGTTTTTACTCATGCAGATGTTAAGCCTGGGATGATAGTGAAGGCTAAAGTCGTTTCTCTCATAAGTCTAGGTGCTATTGTGCAATTTCCTGGTGGCGTCAAGGCACTCTGTCCTTTGCAACATATGTCTGAATTTGATATTGAGAAGCCTCGTAAAAAGTTTAAGGTTGGAGCTGAGTTAGTTTTTCGTGTGCTGGGTTGCAAATCAAAGAGAATAACCGTGACACATAAGAAAACACTTGTGAAATCAAAACTTAGCATTCTTAGTTCGTATGCTGACGCTGTAGAAGGACTAATAACTCATGGGTGGATTACGAGTATAGAGAATCGTGGATGTTTTGTAAAATTTTATAATGGAGTTCAAGGACTTGCTCCTAGATCTGAACTTGGGTTAGAACCAGGATGCAGCACAAGTTCAAGATATCATGTTGGACAAGTAGTTAAATGCAGAGTAACAAGTTCAGCTTCACGCCATATCAATCTCAGTTTCATAATCTCTCCAACAAAGGTTTCTGAAGATGACATGGTGAAATTGGGTAGCATTGTTTCTGGAGTTGTTGAGTTGGTTACGCCCAGTGAAGTATTTTTACATGTAAATGTAAAGGGAAACATGAAGGGTACTATATTTGTAGAGCATCTTGCCGATCACCAGGGGCATGTTGCTCAGCTGAAGTCTGTGTTGAAGCCAGGGCATGAACTTTCTCAGCTGTTGGTTCTAGATATTGAAGGAAACAACTTAATACTCAGTGCAAAATATTCTCTTGTTCATGCCCAACCACAGCTTCCTGGTAATGCTACCCAGATTCGTACAAACACTGTTATCCACGGATATGTATGTAACTTGATTGAAACTGGCTGTTTTGTACGGTTTCTTGGACGTTTGACTGGTTTCTCTCCAAGAAAGAAGTCTCTGGATGATAGAAACATTGATATTTCTGAAGCCTTTTATATTGGACAATCTGTTCGCAGCAGTGTTCTAGATGTTAATGAAGAAACTGGTCGAGTGACATTGTCATTGAAGCAGTCTACTTGTTCATCCACAGATACTTCTTTCCTCCAGTCATATTTCTTAACAGAGGAGAAGATTGCTAAGCTTCAAATCTCTGATTCAGGTTCAAGTGGCTCTGGGATTGGTTGGGTTGAAAATTTCACTATTGGATGTGCTGTTGAGGGAAGAATTCATGAGGCAAAGGATTTTGGGGTGGTTGTTAGCTTTGAGAAATATGCTGATGTTTTTGGTTTCATTACCCATTATCAGTTGGGTGGGAAAACCTTTGAAACTGGCTCTCCAATTCAAGCTATAGTTCTCGATATTGCTAAGTCAGAGCGCTTGGTTGATCTTTCTTTGAAGCCTGAATTTGTTAAACAAGCTGAAAAAAACATTTCCAAAACTCCAGTGGCTAAGAAGAAACGCAAAAGAGAAGCTAGGGAATTGAAGTTGAATGAAACAGTGAATGCAATAGTAGAGGTAGTCAAAGAGGATTACTTGGTAGTTTCCTTACCAGAGTATGGTTTTGCTATTGGATACATAGCTGCATCTGACTATAATACTCAAAGGTTACGTCGGAAGCAATACTCTAACGGTGAAGCTCTTGGTGCTACTGTCATGACACTCCCAAGTGATGCAACAACTGGACGATTACTGCTGCTTGAATCTTTTACCCAGGCCGCTGACACTTCAAATTCAAAGAAGGCGAAAAAGAGGTCTGGATATGATGTTGGGTCTGTGGTTCAGGCAGAGGTCACAGATATTAAACCTCTTGAGCTGCGACTTAAGTTTGGGATTGGATTCCGTGGACGAGTCCACATTACAGAGGCTGAGAATGTTGTTGAAAACCCCTTCTCAATTTACAAAGTGGGACAGGTATTGACAGCTAAGATTGTTGCAAAGTTTGTGGCACCAGAAAACAGTAAAAAAGGCGGCTTGTGGGAGTTGTCTCTCAAACCATCACTGTCAGGTTCAACTTTGATGGGAAAGAGGCAAAGTGATCAAGATTTTGACTTTTCAGTTGGGCAGCAAGTTAGTGGTTATGTCTGCAAAGTGGATAATGAGTGGATCTGGATAGCAATTTCTTTGCAAGTGAGGGCTCAGCTTTTCATCCTTGACACTTCATGTGATCCTGATGAACTTGAGAAATTCCAGAAGCGTTTCAGGGTGGGGGAGAGAGTCTCTGGGTATATCATAAGCATCAATAAAGAAAAGAAGACTCTGCGATTGATTTCCCGTCCATTTTCTGATGTCGTCAATGGAGTAGATGTAGGATTAGTCAAGGAACCTAATATGAGCAGTGATACGTCAGATGAGAAGGGACTTTCTTATGTTCATAAAGGCGATGTTCTTGGTGGCAGGGTGTCGAAGATCCTTCCAGGTGTTGGTGGCATGTTTGTGCAGATAGGCCCTCATTTGTATGGGAAGGTTCACTACACTGAACTCACTGAGTCATTTGTTCCCGACCCTGTATCTGATTATCATGAAGGTCAGTTTGTTAAGTGCAAGGTCCTAGAGATGAGAAACTCAAGCAAGGGCACTGTCCAAATTGATTTGTCTTTGCGCACATCCTTTGAATGCCTTGATGCCAGGGATTCTTCTGACAACCGCATTGAGAAGATTGAAGCGCTTCAGCCTGATATGATGGTAAAGGGTTATGTAAAGAATGTTACCCCTAAAGGGTGCTTCATTATGCTTTCTAGGAGCATTGATGCACAAATTAAGCTAGCTAACTTGTCTGATGGATTTGTTGAAGATCCGGAAAAGGAATTTCCTCTTGGTAGACTTGTAACTGGGAAAGTTATATCTGTGGAACCTCTTTCAAAACGTGTTGAAGTGACTTTGAAGGCAGCTAATAAGAACAGCATCCTCAAATCTGATTCCAGTGATTTAAGTAGTTTGCATGTTGGGGATGTTGTAGAAGGCAGAGTTAAGCGTGTTGAGTCATTTGGTCTATTTATAGTGATTGATACTACAAACTTGGTTGGATTGTGCCATGTCTCAGAGATTTCAGATGAGCGTATTGAGAATATTGATGAGAAATTCAGAGCCGGTGACAGAGTTACTGCAAAAATATTGAAAGTTGATGTGGAGAGACATAGAATTTCACTTGGAATGAAGGCATCTTATTTGAGGGATGGTGATGATGAAGTTAGCATTTCATCACAAAATTCTGATGGAGAAACTGAGCTTGATTTGGTTGTCGATAATCTATCAGAGGGTCCTATGCCTCAAAGTTCATGTTCTGATTCTGATTCTGAATTTGAGCATGAGGTTGGATCAGCTCTTATCCAAGTAGAATCAAGGGCTTCTGTCCCACCCCTTGATGTTATTCTTGATGATATGGAGGAGGATGATACTATGAATGGTGAACTTCACAAAAAGGAAAATGAAGTTGATGCTGTAGAACCTATGGATGAGAAGAGCAAGAGAAAAGAAAAGAAGAAGGCAAAGGAAGAGAAGGAGCTTGAAATCAGGGCTGCTGAACAGCGTTTGCTGGAGAGAGATGTGCCGAGAACTACTGATGAGTTTGAGAAAGCAGTTAGAAGCTCCCCAAACAGTAGCTTTGTCTGGATAAAATACATGCAATTTATGCTTTCTATGGCTGATGTTGAGGGAGCCCGTTCAGTTGCTGAAAGGGCTTTGAAAACCATCAATATAACCTATGAAACAGAGAAGCTGAACATTTGGGTAGCATATCTTAATTTGGAGAATCAATATGGTAATCCTCGCGAGGAAGCCGTAACTGGACTATTCCAAAGGGCACTGCAGTTTTGTGATCCCATGAAGTTGCATTTGGAACTCTTAGGATTGTATGAGAGGACTGAGCAACAAAAGTTGGCTGATGTGCTTCTTGTTAAAATGTGTAAAAAGTTCAAAAATTCATGTGAGGTATGGCTGAGACGAATTCAGTGGCTCTTAAAGCAAAAACCTGAGGGAGTTGATGAAGATGTGAGACGTGCTCTGTTATGTCTTCCTCAATACGAACATATAAAATTTCTTTCACAAGTTGCAATTCTGGAGTTCAAAAGCGGTGTTCCTGATAAAGGGCGGTCAATGTTTGAGAAAATGTTGCGTGAATACCCTAAGAGGAGAGATTTGTGGAGTGTATATCTCGATCAGGAAATCAGGCTTGGGGACATGGACTTAATCCGCGCATTGTTCGAGAGAGCAACTAGTTTAAGTCTTCCAGCAAAAAAGATGAAGTTCTTGTTCAAGAAGTACCTCAATTATGAAAAGTCACTTGGTGACGAAGAGCGGATTCAACATGTGATCCAAAAGGCCAATGAATATGTGGAGACTGCTGCAGTGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_72131.p1 GENE.R_Transcript_72131~~R_Transcript_72131.p1 ORF type:complete len:1953 (+),score=461.67,S1|PF00575.19|77,S1|PF00575.19|39,S1|PF00575.19|1.3,S1|PF00575.19|1.3e-06,S1|PF00575.19|0.0024,S1|PF00575.19|5.7,S1|PF00575.19|7.2e-06,S1|PF00575.19|11,S1|PF00575.19|1.5e+04,S1|PF00575.19|0.0042,S1|PF00575.19|1.9,S1|PF00575.19|7.5e-07,S1|PF00575.19|0.024,S1|PF00575.19|6.2e-18,Suf|PF05843.10|2.4e+03,Suf|PF05843.10|0.0029,Suf|PF05843.10|1.4e-08 R_Transcript_72131:131-5860(+)
MAAISNNKKRKSRDNKPSSNSSNDNNNTNESNSQSLQFDDDVPDFPRGGGSKLSRAERQELREEVDIEFDAQERYSKRKKGRGSKMNGKSTSEDDFGSLFGEGITGKLPRFANKITLKNISPGMKLWGVISEVNEKDLAVSLPGGLRGLVRATEAVEPVVLDSIQDVEGHLLSKLFYVGQLVSCIVLQVDDDKKETGKRKVWLSLRLSLLHKGYNLDAVQEGMVLTAFVKSIEDHGYILHFGLPSFTGFSPKTSEEDAREVIVGQLVQGVVRSIDKTRKIVYLASDTAMVSKCVTKDLKGISLDLLVPGMMVNARIQSTLENGVLLSFLTYFTGTADIFHLESARVAADWKKQYDKNKKVNARILFIDPSTRAVGLTMNPHLLLNKSPPSLVKTGEIYDHSKIIRVDRGFGLLLEIPSLPSPTPAYVPVCDVADEEVSKLERKFKEGSDVRARVLGFRHLEGLAMCVLKASAFEGAVFTHADVKPGMIVKAKVVSLISLGAIVQFPGGVKALCPLQHMSEFDIEKPRKKFKVGAELVFRVLGCKSKRITVTHKKTLVKSKLSILSSYADAVEGLITHGWITSIENRGCFVKFYNGVQGLAPRSELGLEPGCSTSSRYHVGQVVKCRVTSSASRHINLSFIISPTKVSEDDMVKLGSIVSGVVELVTPSEVFLHVNVKGNMKGTIFVEHLADHQGHVAQLKSVLKPGHELSQLLVLDIEGNNLILSAKYSLVHAQPQLPGNATQIRTNTVIHGYVCNLIETGCFVRFLGRLTGFSPRKKSLDDRNIDISEAFYIGQSVRSSVLDVNEETGRVTLSLKQSTCSSTDTSFLQSYFLTEEKIAKLQISDSGSSGSGIGWVENFTIGCAVEGRIHEAKDFGVVVSFEKYADVFGFITHYQLGGKTFETGSPIQAIVLDIAKSERLVDLSLKPEFVKQAEKNISKTPVAKKKRKREARELKLNETVNAIVEVVKEDYLVVSLPEYGFAIGYIAASDYNTQRLRRKQYSNGEALGATVMTLPSDATTGRLLLLESFTQAADTSNSKKAKKRSGYDVGSVVQAEVTDIKPLELRLKFGIGFRGRVHITEAENVVENPFSIYKVGQVLTAKIVAKFVAPENSKKGGLWELSLKPSLSGSTLMGKRQSDQDFDFSVGQQVSGYVCKVDNEWIWIAISLQVRAQLFILDTSCDPDELEKFQKRFRVGERVSGYIISINKEKKTLRLISRPFSDVVNGVDVGLVKEPNMSSDTSDEKGLSYVHKGDVLGGRVSKILPGVGGMFVQIGPHLYGKVHYTELTESFVPDPVSDYHEGQFVKCKVLEMRNSSKGTVQIDLSLRTSFECLDARDSSDNRIEKIEALQPDMMVKGYVKNVTPKGCFIMLSRSIDAQIKLANLSDGFVEDPEKEFPLGRLVTGKVISVEPLSKRVEVTLKAANKNSILKSDSSDLSSLHVGDVVEGRVKRVESFGLFIVIDTTNLVGLCHVSEISDERIENIDEKFRAGDRVTAKILKVDVERHRISLGMKASYLRDGDDEVSISSQNSDGETELDLVVDNLSEGPMPQSSCSDSDSEFEHEVGSALIQVESRASVPPLDVILDDMEEDDTMNGELHKKENEVDAVEPMDEKSKRKEKKKAKEEKELEIRAAEQRLLERDVPRTTDEFEKAVRSSPNSSFVWIKYMQFMLSMADVEGARSVAERALKTINITYETEKLNIWVAYLNLENQYGNPREEAVTGLFQRALQFCDPMKLHLELLGLYERTEQQKLADVLLVKMCKKFKNSCEVWLRRIQWLLKQKPEGVDEDVRRALLCLPQYEHIKFLSQVAILEFKSGVPDKGRSMFEKMLREYPKRRDLWSVYLDQEIRLGDMDLIRALFERATSLSLPAKKMKFLFKKYLNYEKSLGDEERIQHVIQKANEYVETAAV*

Click here to download the sequence:
Link to NCBI Protein BLAST