Transcript Information: R_Transcript_72302.p1


Annotated TAIR IDAT5G46400.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)AT PRP39-2, PRP39-2
Annotation TypeOrtholog
Chromosome Positionchr5:18820032-18824522 | Forward length=1036
E-Value4.4E-180
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.6910851077375
Replicate 22.257281444073
Replicate 33.2249246615744
Condition 2: 8 Hour
Replicate 13.3218878213413
Replicate 23.6632161378052
Replicate 33.918393760203
Condition 3: 24 Hour
Replicate 15.1322060526096
Replicate 23.613148214156
Replicate 34.6688789861129


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_72302.p1 GENE.R_Transcript_72302~~R_Transcript_72302.p1 ORF type:complete len:1172 (+),score=299.96,TPR_14|PF13428.2|3.1e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|4.8,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|7.8,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|1.1e+04,TPR_11|PF13414.2|4e+03,TPR_11|PF13414.2|8.5e+03,TPR_11|PF13414.2|2.3,TPR_11|PF13414.2|0.013 R_Transcript_72302:114-3629(+)
ATGGCAGTTGGTTCTTCCGATGAGTTTGATGAACTTAGGTTTCATGAAGTGGTTGCTCAAGGCTCCTTGGACTTTGAAGCTTGGACTAGTCTCATCTCAACTGTTGAACATAATTATCATGATGACATAGATGAAATAAGTCTGGTGTATGACTCATTCTTGTCTGAGTTTCCTCTATGCTATGGTTATTGGAAGAAATATGCTGAGCACAAGGCACGTTTATGTAGTGGAGAAAGTGTTGCTCAAATCTTTGAACGAGCTGTTGAGTCAGCTCCGTACTCTGTTGGTGTATGGGTTGACTATTGCAACTTTGGAGTTTCATCCTTAGAGGATCCATCAGAAATTTTCAGATTATTTCAAAGAGGGCTCTCATTTATTGGGAGAGATTATCTGTGCTACAATTTGTGGGATAAATATATTGCATTTGAGTTTGCTCAGCAACATTGGAATTCCTTGGCAAACATCTATATCCAAACTTTAAAATTCCCAACAAAGAAATTGCATCAGTACTATGAAAGTTTCAAGAAATTGGTTGCCATTTGGGAAGAAGAGATAGGATTTCAGGGGAGTTCAGGCATTTATGAGCAATTAGCACATGACAAAGATGACAAGATTAAGACATACGAAGATACTGAAATCTCCCAGGTCATTAGTGACTTGCTTGATCCATCTGCTAGATCTGAAGCATTACTGAAGTATGTATCTATTGGAGAACAGTTTTATAGAAGAGCATGTGACTTGGATGCAAAAGTTCATAAGTTTGAGCAGAACATTCGTCGACCTTATTTTCATGTGAAGCCACTTGATGACAATCAACTACAGAATTGGCATAGCTACTTAGATCTTGTTGAGGAGGAAGATGATTTTGACTGGGCTGTGAAACTTTATGAAAGATGCTTAATCTCTTGTGCCAATTACCCTGAGTTCTGGATGCGCTATGTTGAATATGTGGAGTCTAAGGGAGGAAGAGAGATAGCTTTGGATGCTTTAGAGCGAGCAACCCACATCTTTTTAAAGAATGCACCTGAAATTCATCTTTACAATGCTTGGTATAAGGAGAAAAATGGGGATGTTGATGGTGTACATGCAGCATTTCAACAGTGTGACCAAGATTCTGAATCCTGTTTCATTGATATTGTTCGAAGGAAAGCTAATATGGAAAGACGCTTGGGAAACTATGTTGCGGCATATAAAGTTTACGAGGAGGCTCTTGATTTGGCTTCAGAAAAGAGACCTGACACACTTCCTATATTGTATGTGCATTTTGCGCGTCTTCAATACACGATCAAGAGCAATGTAGAGGCAGCCAGAGAGGTTTTGCTAAATGGTATTCAACGTGTGCCTCAATCCAAGGTACTCCTCAAGGAACTTGTACTCTTTGCATTGATGAATGAAGGAGCAATTGAAGTGGACACTGTAGATTCTATTATGGCTAAGGCTCTTGCCCTTGCATTGGATAATTCTGGTGGCATCAGAGAATGGGAGGAACTATCAAATTTATATCTAGAGTTTGTTGATTTATGTGGAAGCATTCACGATGTTAGGAGGGCGTGGAAGCGCCATTTAAAATTGTTTCCACACTTGCTCAGATTTCGGCCTTCACTTAAGAATCCTGCTAAAGCTGGTGTCTTTTGGAAGATGGTCAGAAAGGGGAGACCTGATGATGTTGACACTCACCCCCAAAACCCTTTGGAGAACCGTGGCGAAGAGATGCCTTTGCAAAAGGAGAAACCACTGGTAAATGAGAATGTTGACAAGTCTGAAGATGATATTTGCGGCCAGGAACAGTCTGAAGATGGTAATGGCAGTCCTAATGATTTGGAGCCGGTGCCTTCAGAGGTGATGAAGACACAGGGTGTATGTAAAGCAAATGAGCAGAGGGATCACATTTTACATGAATCAGCCGATGACAGAGACCCAATGGAGGTTAAGGGTTCCAAGTTAACTAACATTCAGCAAGAGCAGCAGGGGCAGGAGCAGGAGGGGAAACCAGGAGAAGTGCAGAGGTCTCGACAAGAAAAGCCACCTTCACGCTCTCAGAGACTAGACCCTCCTCGAAAAACTTCTCTTTCAAATGGAAGCAAAACTGTTAGTGGCCGCAATATTGATGAAGGCCCCTCGGTATCTGGTGCCAGGAGTCCTGACAATAATGGTGCTGAAAGATGTAAAGAGTCTCCTGGTCCCTCCTCTACAATTGGCCACAAAAATCTCTCTCCTGAAGTTTCAGCTCGTCGTTCTTCAGACAGGGATGGAAACTGGCGCCGAAACCCTTCGAGTAGAGGTCGCTCAGATTTTTCTCCTAGCAATTCAGAAGAACGTTTGGAAAGGTCACTTTCTCCAAGAAGACGCAGTTCTCATGGGTATGTAGATGACCGGCGCCGTAGAGAGAGGTCTCTTTCTCCACGGCGTTACAGTTCTCGTTGGCAGTCAGAAGAACGTTGGCAGCGAGAGAGACGTCATCGTCGTTATAATCGGTATCAAGATAATTCACGTGGTCACAGAGATGTTAGGATGCAAAATCAAAGTCAAGTGGTTGTCGCCAATTCTGTGCAAATGCCAAATGCCCAACAACAGACTACGGGATTTGTATCTCAGACCCAACCTAATGTGCAGCCCATTACTTACACTCAAGCTCAGATAAACCAGTGTCCACCTCCTAGTAATGACCAATATGGGAATGTGCCAAATAGCCAGCTGTACAATCAAATGTGGCAACAATATTATTATTATAATCAGCAGCAGCAGCAGCAGACTCTCCTGCCACAGCAGCCACTTGTTCAGCAGCAACAACTTCAACAGATTCAACCTAATCAGCAGCTCCAGCAACAGGTGCAAAATCCAGCACAACAGCAAATACAAGCTCCTCAGTATCCGCAACAGATACAGCCGAATCAACAACAGCTTCTACACTTACAGTATCAGCATCAGCAGTTGTATCAGCTTTCGGAATTTCAGCAGCAAAACCAGCCGAAACAAACTAATGAAATGCCACAGTCTAAGGAGCAAGAATCACAGTTGCAGCTTCCACAACAGCAACTGCACCACCAGCTGCAGGTGCAGCAACAAGAGCAGCAACAACAGGCACAAAATCAGGTCCAACAACAACCTCAAGTCCAACAACAGGAGGATGTGGATGTGCAACGACAGCAGCAAGCATTTCAGTATCAGCAGCTTCAGCAACAACAATACTTACTCTACCTTCAGCAGCTGCAATATCAGCATACACAGTCACAGCAGCAGCCAGGACCAAGTCAAGACCAGCATTCATTGCAGCAACAGCCTTTTCCTGCAAAACAAGAGCAGCAAGAACATATTCAAGAGCTGCAGCATACAGATGAAAAATCACGTTCACAGCCTTTGCAGGATGACGGTTCATCTCTAGTTGGTTCATGGAGCGGCAGTCAGTATCAACAGGATCGAGGAGTAGAATGTCGTCAGGCCTCTGCTTCTACTGAAGCTGCTACATTGCCTCAATCTCAAGAAGAGCTGCCTGAAATTGAAGGAACAGACATGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_72302.p1 GENE.R_Transcript_72302~~R_Transcript_72302.p1 ORF type:complete len:1172 (+),score=299.96,TPR_14|PF13428.2|3.1e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|4.8,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|7.8,TPR_14|PF13428.2|1.1e+03,TPR_14|PF13428.2|1.1e+04,TPR_11|PF13414.2|4e+03,TPR_11|PF13414.2|8.5e+03,TPR_11|PF13414.2|2.3,TPR_11|PF13414.2|0.013 R_Transcript_72302:114-3629(+)
MAVGSSDEFDELRFHEVVAQGSLDFEAWTSLISTVEHNYHDDIDEISLVYDSFLSEFPLCYGYWKKYAEHKARLCSGESVAQIFERAVESAPYSVGVWVDYCNFGVSSLEDPSEIFRLFQRGLSFIGRDYLCYNLWDKYIAFEFAQQHWNSLANIYIQTLKFPTKKLHQYYESFKKLVAIWEEEIGFQGSSGIYEQLAHDKDDKIKTYEDTEISQVISDLLDPSARSEALLKYVSIGEQFYRRACDLDAKVHKFEQNIRRPYFHVKPLDDNQLQNWHSYLDLVEEEDDFDWAVKLYERCLISCANYPEFWMRYVEYVESKGGREIALDALERATHIFLKNAPEIHLYNAWYKEKNGDVDGVHAAFQQCDQDSESCFIDIVRRKANMERRLGNYVAAYKVYEEALDLASEKRPDTLPILYVHFARLQYTIKSNVEAAREVLLNGIQRVPQSKVLLKELVLFALMNEGAIEVDTVDSIMAKALALALDNSGGIREWEELSNLYLEFVDLCGSIHDVRRAWKRHLKLFPHLLRFRPSLKNPAKAGVFWKMVRKGRPDDVDTHPQNPLENRGEEMPLQKEKPLVNENVDKSEDDICGQEQSEDGNGSPNDLEPVPSEVMKTQGVCKANEQRDHILHESADDRDPMEVKGSKLTNIQQEQQGQEQEGKPGEVQRSRQEKPPSRSQRLDPPRKTSLSNGSKTVSGRNIDEGPSVSGARSPDNNGAERCKESPGPSSTIGHKNLSPEVSARRSSDRDGNWRRNPSSRGRSDFSPSNSEERLERSLSPRRRSSHGYVDDRRRRERSLSPRRYSSRWQSEERWQRERRHRRYNRYQDNSRGHRDVRMQNQSQVVVANSVQMPNAQQQTTGFVSQTQPNVQPITYTQAQINQCPPPSNDQYGNVPNSQLYNQMWQQYYYYNQQQQQQTLLPQQPLVQQQQLQQIQPNQQLQQQVQNPAQQQIQAPQYPQQIQPNQQQLLHLQYQHQQLYQLSEFQQQNQPKQTNEMPQSKEQESQLQLPQQQLHHQLQVQQQEQQQQAQNQVQQQPQVQQQEDVDVQRQQQAFQYQQLQQQQYLLYLQQLQYQHTQSQQQPGPSQDQHSLQQQPFPAKQEQQEHIQELQHTDEKSRSQPLQDDGSSLVGSWSGSQYQQDRGVECRQASASTEAATLPQSQEELPEIEGTDM*

Click here to download the sequence:
Link to NCBI Protein BLAST