Transcript Information: R_Transcript_72339.p1


Annotated TAIR IDATCG00170.1
Annotated Gene NameDNA-directed RNA polymerase family protein
Annotated Gene Symbol(s)RPOC2
Annotation TypeOrtholog
Chromosome PositionchrC:15938-20068 | Reverse length=1376
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.338079423603
Replicate 22.26161023407
Replicate 32.5840933969459
Condition 2: 8 Hour
Replicate 12.7622336730881
Replicate 21.6274295372042
Replicate 31.7041905167612
Condition 3: 24 Hour
Replicate 11.5037864996313
Replicate 21.8459641720643
Replicate 32.2142583344095


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_72339.p1 GENE.R_Transcript_72339~~R_Transcript_72339.p1 ORF type:complete len:1374 (+),score=18.03,RNA_pol_Rpb1_5|PF04998.13|5.5e-42,RNA_pol_Rpb1_5|PF04998.13|4.4e-06,RNA_pol_Rpb1_4|PF05000.13|1e-09 R_Transcript_72339:2567-6688(+)
ATGGAGGTACTTATGGCAGAACGGGCCAATTTGGTCTTTCACAATAAAGCGATAGATGGAACTGCCATGAAACGACTTATTAGCAGATTAATAGATCACTTTGGAATGGCATATACATCACACATCCTGGACCAAGTAAAGACTCTGGGCTTCCAGCAAGCCACTGCTACATCCATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCAAGATGCTGAACAGCAAAGTTTAATTTTGGAAAAACACCATCATTATGGGAATGTACACGCGGTAGAAAAATTACGCCAATCTATTGAGATATGGTATTCTACAAGTGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCTTATAATCCAGTGCATATAATGTCTTTTTCGGGAGCTAGAGGAAATGTGTCTCAGGTACATCAATTAGTAGGTATGAGAGGATTAATGTCGGATCCACAAGGACAAATGATTGATTTACCTATTCAAAGCAATTTACGTGAGGGGCTCTCTTTAACAGAATATATCATTTCTTGCTACGGAGCCCGCAAAGGAGTTGTGGATACCGCTGTACGAACATCGGATGCTGGATATCTCACGCGCAGGCTTGTCGAAGTAGTTCAACATATTGTTGTACGTAGAACGGATTGTGGCACCGTTCGAGGTATTTCTGTAAGTCCTCAAAATGGTCTAATGCCGGAAAGAATTTTTATACAAACATTAATTGGTCGTGTATTAGCAGATGATATATATATGGGTTCGCGGTGTATGGCCACCCGAAATCAAGATATCGGGGTTGGACTTGTTAATCGATTCATAACCCTTCGAATCCAACCAATATCCATTCGAACTCCTTTTACATGTAGGAGTATGTCTTGGATCTGTCGATTATGTTATGGTCGGAGTCCTACTCACGGCGACCTGGTCGAATTGGGAGAAGCTGTAGGTATTATTGCGGGCCAATCCATTGGGGAACCCGGTACTCAACTAACATTAAGAACTTTTCATACGGGCGGAGTATTCACGGGGGGTACTGCAGAACATGTCCGAGCCCCTTCTAATGGAAAAATTAAATTCAATGAGGATTTGGTTCATCCCACACGTACACGTCATGGGCATCCTGCCTTTTTATGTTATATAGACTTATATGTCACTATTGAAAGTGAAGATATTCTACATAATGTAAATATTCCGCCAAAAAGTTTTCTTTTATTTCAAAATGATCAATATGTTGAATCTGAACAAGTGATTGCTGAAATTCGCGCGGGTACATCCACCTTGAATTTTAAGGAAAGGGTTCGAAAACATATTTATTCTGACTCAGAAGGAGAAATGCACTGGAGTACTGATGTGTACCATGTACCTGAATTTACATACGGTAATGTTCATCTCTTACCAAAAACAAGTCGTTTATGGATATTATCAGGAAGGCCGCGCAGATCTAGTATAGTCCCCCTTTCGCTCCACAAGGATCAAGATCAAACAAACGTCCATTCTCTTTCGTTCGAACAAAGATATATTTCTAACTCTTCAGTGACTAATGATCAAGTAAAAGATAAATTATTGGATCCTTCTAAAAATAAGGAAGATAGGATTCCGGATTATTTAGAACTTAATCGAGTAAGTCATTCGAATCTTATAGATTCTGCCAAAAATTTTGATTTATTGGCAAAAAGGCGAAGAAATAGATTCATCATTCCATTTCAATCAAGTCCAGAACAAGAAAAAGAATTAATGCCCCTTTCCGCTATCTCAATTGAAGTCCCCATAAATGGTATTTTCCGTAGAAATAGTATTTTTGCTTATTTCGACGATCCGCGATACCGAAGAAAGAGTTCAGGAATTACTAAATATGGTCCTATAGATATGCATTCAATCGTTAAAAAAGAGGATTTGATTGAATATAGAGGAGTCAAAGAATTTCGACCAAAATACCAAATGAAAGTAGATCGGTTTTTTTTCATTCCCGAGGAAGTGCATATCTTACCCGGATCTTGTTCCATAATGGTACGGAACAATAGTATCATTGGAGTAGATACGCAAATCACTTTAAATACAAGAAGCCGAGTAGGCGGAGTGGTCCGAGTGGAGAGGAAAAAAAAAAAGATTGAACTTCAAATTTTTTCTGGAGATATCCATTTTCCTGGGGAGATAGATAAGATATCACGACACAGTGGCATTTTGATACCACCCGGAAGTAAAAATTCCAAGGAATCAAAAAATTTGAAAAAATGGATCTATGTCCAACGGATCACCCCTACCAAGAAAAAGTATTTTGTTTTGGTCCGACCCGTAGTTACATATGAAATAACGGACGGTATAAATTTAGCAACACTTTTCCCTCAGGATCTGTTGCAGGAAAAGGATAATGTGCAACTTCGAGTTGTCAATTATATCCTTTATGGAAATGGCAAAGCCACTCGAGGAATTTCGGACACAAGTATTCAATTAGTTCGTACTTGTTTAGTATTGAATTGGAACCAAGATCAAAAAAGTTCTTCTATCGAAAAGGCAAGCGCTTCCCTTGTTGAAGTACGAACAAAAGGTATGATTCGAGATTTCCTACGGATCGATTTAGTGAAATCCACTAGTTCGTATATCGGGAAAAGAAATGATCCCTTATTTTTTTCTGATAATGGATCCGATCATATCAATATGAATCCATTTTATTCCATTTATTCAAAGACAAAACTTCAACAATCGTTTAACCAAAATCAAGAAACTGTTCGTACGTTGTTGGGTATAAATAAGGAATGTCAATCTTTTATAATTTTGTCATCATCCAATTGTTTTAGAATAGGTCCATTCACATTCAATGGTGGAAAATATCCAAAAGAATCAATTAAAAAAGATCACCTAATTCCAATTAAGAATTCATTGGGTCCTTTAGGAACAGCACTTCCAATTGCGAATTTTTTTTCATTTTACCATTTAATAACTCATAATTTAACTCATAATCAGATCTTGGTAACTAATTATTTCCAACTTGACAATTTAAAACAAACCTTTCAAGTACTTAAATTTCAATATTATTTAATGGATGAAAACGGGAGGATTTACAATCCCGATGCATCCAGTAACATTATTTTGAATCCATTCAAATTAGATTGGTATTTGCTTCACTACAATTTTTGTGAAGAGACATCCACAAAAATTCATCTTGGACAATTTATTTGTGAAAATGTATGTATAGCAAAAAATGGACCGTACTTAAAATCGGGTCAAGTTCTAATTGTTCAATTTGACTCTGTAGTAATAAGATCGGCTAAGCCTTATTTGGCCACCCCAGGGGCAACAGTTCATGGTCATTATGGAGAAATCATTTATGAAGGGGATACGTTAGTTACATTTATATATGAAAAATCGAGGTCCGGTGATATAACGCAAGGCCTTCCAAAAGTAGAACAAGTGTTAGAAGTTCGTTCGATTGGTTCAATATCGATGAATTTAGAAAAGAGGATTAATGGTTGGAACGAACTTCTAACAAGAATTCTTGGAATTCCTTGGGGATTCTTGATTGGAGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAATAAAATCCAAAAGGTTTATCGATCCCAGGGGGTGCAGATCCATAATAGGCATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTGCGCGCGGAACGAACGGGGCGGGCTTTAGAAGAAGCAATCTGTTACCGAGCTATCTTATTGGGAATAACGAGAGCATCTCTAAATACTCAAAGTTTTATATCCGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCTGCTCTCCGAGGCCGTATGGATTGGTTGAAAGGATTAAAAGAAAATGTTGTTCTGGGGGGGATGATACCCGTTGGTACGGGATTTAAAGGATTCGTGCATCGTTCAAGTCAACATCAGAACATTCCCTTGAAAACAACAAAAAAGAATCTATTCGAGGGAGAAATGAGAGATATTTTGTTTTACCACAGAGAATTATTTGATTCTTGGCTTTCAAAGAATTTACATGATAAATCAAAACAACAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_72339.p1 GENE.R_Transcript_72339~~R_Transcript_72339.p1 ORF type:complete len:1374 (+),score=18.03,RNA_pol_Rpb1_5|PF04998.13|5.5e-42,RNA_pol_Rpb1_5|PF04998.13|4.4e-06,RNA_pol_Rpb1_4|PF05000.13|1e-09 R_Transcript_72339:2567-6688(+)
MEVLMAERANLVFHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYSTSEYLRQEMNPNFRMTDPYNPVHIMSFSGARGNVSQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPQNGLMPERIFIQTLIGRVLADDIYMGSRCMATRNQDIGVGLVNRFITLRIQPISIRTPFTCRSMSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPSNGKIKFNEDLVHPTRTRHGHPAFLCYIDLYVTIESEDILHNVNIPPKSFLLFQNDQYVESEQVIAEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHVPEFTYGNVHLLPKTSRLWILSGRPRRSSIVPLSLHKDQDQTNVHSLSFEQRYISNSSVTNDQVKDKLLDPSKNKEDRIPDYLELNRVSHSNLIDSAKNFDLLAKRRRNRFIIPFQSSPEQEKELMPLSAISIEVPINGIFRRNSIFAYFDDPRYRRKSSGITKYGPIDMHSIVKKEDLIEYRGVKEFRPKYQMKVDRFFFIPEEVHILPGSCSIMVRNNSIIGVDTQITLNTRSRVGGVVRVERKKKKIELQIFSGDIHFPGEIDKISRHSGILIPPGSKNSKESKNLKKWIYVQRITPTKKKYFVLVRPVVTYEITDGINLATLFPQDLLQEKDNVQLRVVNYILYGNGKATRGISDTSIQLVRTCLVLNWNQDQKSSSIEKASASLVEVRTKGMIRDFLRIDLVKSTSSYIGKRNDPLFFSDNGSDHINMNPFYSIYSKTKLQQSFNQNQETVRTLLGINKECQSFIILSSSNCFRIGPFTFNGGKYPKESIKKDHLIPIKNSLGPLGTALPIANFFSFYHLITHNLTHNQILVTNYFQLDNLKQTFQVLKFQYYLMDENGRIYNPDASSNIILNPFKLDWYLLHYNFCEETSTKIHLGQFICENVCIAKNGPYLKSGQVLIVQFDSVVIRSAKPYLATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIGSISMNLEKRINGWNELLTRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRMDWLKGLKENVVLGGMIPVGTGFKGFVHRSSQHQNIPLKTTKKNLFEGEMRDILFYHRELFDSWLSKNLHDKSKQQ*

Click here to download the sequence:
Link to NCBI Protein BLAST