Transcript Information: R_Transcript_72339.p2


Annotated TAIR IDATCG00180.1
Annotated Gene NameDNA-directed RNA polymerase family protein
Annotated Gene Symbol(s)RPOC1
Annotation TypeOrtholog
Chromosome PositionchrC:20251-23084 | Reverse length=680
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.2431839581806
Replicate 23.7306201914421
Replicate 33.2964174514287
Condition 2: 8 Hour
Replicate 13.4877076356575
Replicate 22.8238411723083
Replicate 32.3988912714168
Condition 3: 24 Hour
Replicate 12.7980881055792
Replicate 23.0119516546603
Replicate 33.3426156937406


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_72339.p2 GENE.R_Transcript_72339~~R_Transcript_72339.p2 ORF type:complete len:681 (+),score=11.06,RNA_pol_Rpb1_1|PF04997.8|3.7e-51,RNA_pol_Rpb1_2|PF00623.16|1.1e-07,RNA_pol_Rpb1_2|PF00623.16|7.3e-27,RNA_pol_Rpb1_3|PF04983.14|6.4e-06 R_Transcript_72339:343-2385(+)
ATGATTGATCAGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCACAAAAATTCTACCTAATGGAGAGATAGTTGGAGAGGTGACAAAACCTTATACTTTTCATTACAAAACCAATAAACCAGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGTCCTATAAAAAGTGGAATTTGCGCTTGTGGAAATTATCGAGTAATCGGAGATGAAAAAGAAGACCAAAAGTTTTGTGAACAATGCGGAGTCGAGTTTGTTGATTCTCGAATACGAAGGTATCAAATGGGCTATATTAAATTGGCATGCCCGGTAACCCACGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATTTTTTAGATAAACCTCTTAAAGAATTAGAGGGCCTAGTATATTGCGATTTTTCATTTGCTAGGCCCATAGCCAAAAAACCCACTTTTTTACGATTACGAGGTTTATTCGAATATGAAATCCAATCCTGGAAATACAGTATCCCACTTTTTTTTACGGCCCAAGGTTTTGATACATTTCGAAATAGAGAAATTTCTACTGGAGCTGGTGCTATTCGAGAACAATTAGCCGATTTGGATTTACGAACCATTATAGATTATTCATTGGCAGAATGGAAAGAGTTAGGGGAAGAAGGGTCTACAGGGAATGAATGGGAAGACAGAAAAGTTGGAAGAAGAAAGGATTTCTTAGTTAGACGCATGGAATTAGCTAAGTATTTTATTCGAACAAATATAGAACCAGAATGGATGGTTTTGTGTCTATTACCAGTTCTTCCTCCCGAATTGAGACCAATCATTCAGATAGATGGAGGTAAATTAATGAGTTCGGATATTAATGAACTCTATAGAAGAGTCATCTATCGGAACAATACTCTTACCGATCTATTAACAACAAGTAGATCTACGCCGGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTAGATACACTTCTTGATAATGGAATCCGCGGACAACCGATGAGGGACGGTCATAATAAAGTTTACAAGTCATTTTCAGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTTTACTTGGTAAACGGGTCGATTATTCCGGTCGTTCCGTCATTGTCGTAGGCCCTTCACTTTCATTACATCGATGTGGATTGCCTCGTGAAATTGCAATAGAACTCTTCCAGACATTTGTAATTCGTGGTCTAATTAGAAAACATCTTGCTTCGAACATAGGAGTTGCTAAGAGTCAAATTCGGGAAAAGGCACCGATTGTATGGAAAATACTTCAGGAAGTTATCCAGGGGCATCCTGTATTGTTAAATAGAGCGCCTACTCTACATAGATTAGGCATCCAGGCATTCCAACCCATTTTAGTGGAAGGGCGCGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAAGCTCGTTTACTTATGTTTTCTCATATGAATCTTTTGTCTCCAGCTATTGGGGATCCCATTTCCGTACCAACTCAAGATATGCTTATGGGACTTTATGTATTAACGAGCGGGAATCGTCGAGGTATTTGTGCAAATAGATATAATCCATGGAATCACAAAAACTATCAAAATGAAAGAATTGACGATAATAACTATAAGTATACAAAAGAACCCTTTTTTTGTAATTCTTATGATGCAATTGGAGCTTATCGTCAGAAAAGAATCAATTTAGATAGCCCTTTGTGGCTCCGGTGGAAACTGGATCAACGCGTTATTGCTTCAAGAGAAGCTCCCATCGAAGTTCACTATGAATCTTTGGGTACCTATCATGAGATTTATGGGGACTATCTAATAGTAAGAAGTGTAAAAAAAGAAATTCTTTCTATATATATTCGAACCACTGTTGGTCATATTTCTCTTTATCGAGAAATGGAAGAAGCTATACAAGGATTTTGTCGAGCCTGCTCATATGGTACTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_72339.p2 GENE.R_Transcript_72339~~R_Transcript_72339.p2 ORF type:complete len:681 (+),score=11.06,RNA_pol_Rpb1_1|PF04997.8|3.7e-51,RNA_pol_Rpb1_2|PF00623.16|1.1e-07,RNA_pol_Rpb1_2|PF00623.16|7.3e-27,RNA_pol_Rpb1_3|PF04983.14|6.4e-06 R_Transcript_72339:343-2385(+)
MIDQYKHQQLRIGLVSPQQISAWATKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDEKEDQKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANFLDKPLKELEGLVYCDFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTAQGFDTFRNREISTGAGAIREQLADLDLRTIIDYSLAEWKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKYFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRKHLASNIGVAKSQIREKAPIVWKILQEVIQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLMGLYVLTSGNRRGICANRYNPWNHKNYQNERIDDNNYKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWKLDQRVIASREAPIEVHYESLGTYHEIYGDYLIVRSVKKEILSIYIRTTVGHISLYREMEEAIQGFCRACSYGT*

Click here to download the sequence:
Link to NCBI Protein BLAST