Transcript Information: R_Transcript_72349.p1


Annotated TAIR IDAT1G18660.4
Annotated Gene Namezinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:6421433-6425489 | Forward length=491
E-Value4.7E-218
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.425766028647
Replicate 215.242712981157
Replicate 315.083782220779
Condition 2: 8 Hour
Replicate 113.369582701257
Replicate 213.946971291537
Replicate 321.0469595537
Condition 3: 24 Hour
Replicate 121.079867986174
Replicate 218.717653250694
Replicate 321.216302702637


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_72349.p1 GENE.R_Transcript_72349~~R_Transcript_72349.p1 ORF type:complete len:489 (+),score=78.84,LON_substr_bdg|PF02190.12|4.5e-22,zf-C3HC4_3|PF13920.2|8.5e-09,zf-C3HC4|PF00097.21|3.9e-08,zf-C3HC4_2|PF13923.2|5.4e-08,TPR_11|PF13414.2|8.3e-06,TPR_11|PF13414.2|23,TPR_11|PF13414.2|50,TPR_11|PF13414.2|4.4e+03,zf-RING_2|PF13639.2|3.1e-07,zf-RING_5|PF14634.2|8.2e-07,zf-C3HC4_4|PF15227.2|1.8e-06 R_Transcript_72349:242-1708(+)
ATGTCCGGCGACGAGAATTCGTTGATCGGCGACTTCTTCGACGGCATCGACGATGTTGAAGAGTTCCTCTGTGCGAATGAGGGAGGGGTTTCCATGTCAATTGATAGATTCCGTCAGGTTTTCGAGTTTGTACAGTCCGGTAATCAAGCCTTTCGTGCTTCTCGTTTTGAAGAGGCAATTAATTGTTACTCAACAGCAAATGTCATGAAACCAGGCGATCCTATCATTCTGAGCAATAGATGTGCTGCATATATAAGGTTGAGCCAATTTTTGAAAAGCAGGCCATCTACTGCTTCTGAAAGCAGTCCGTTGTATGGGCTGGATCCTACAACTCATGCCGAGCTTGCATTGAAGGATGCTGAGAAAGTCATCAGCCTTACAAGCAATTCTGTAAAATCACACATTTTGCATGCCGATGCTCTTTTCTTGCTGGAAAGATATAAGCTGGCGCGTGATGTTGCTTTGTCTGGCCTTCAGCTTGATCCTCTCAGCAATCATCTGCAGGCCCTTCTTCGGATTTTGGAGAAAATACTTACTGGTTCGATGGGGGCCAAAAGCCGTGTGAAACCAGAACGTAATGATGATTTTGATTGTACCCTTTGCCTGAAGCTGCTATATGAGCCAATAACAACCCCCTGTGGGCATTCTTTTTGTCGTTCATGTCTATTTCAGTCAATGGATCAAAGTAATAAATGTCCCCTTTGCCGAACTGTGTTATTTATTACTCCAAGGACATGTGCTATCAGTGTGACACTGAACAACATTATACAGAAAAACTTCCCAGAGGAACATGCTGAGAGGAAATCAGAGAATGATAGTTTGACAAAGCTCGGGGTTGATTTGGTACCTCTTTTTGTCATGGATGCTGTCCTCCCTTGTGAGAAAATGATGCTAAATATATTTGAACCTCGCTACAGACTTATGGTTAGGAGGATAATGGAAGGAAATCACCGGATGGGAATGGTCATACTTGATTCTACAACAGGTCATATTGCCGATTTTGCATGTGAAGTAGAGATAACAGAATGTGAGCCATTTCCTGATGGGCGTTTCTACATTGAGGTTGAAGGTCGTCGAAGATTTCGCATCCTTCGATCCTGGGATCAAGATGGGTATCGTGTGGCAGAAGTAGAATGGGTACAAGATATACATCCACCAGAAGGAACAAGAGAGAAAACAGATCTGCAGGAACTGACCAGTAATGCTGCCGAATATGCTCGATTGTGGATGGTGAGGGCGAAGGAAGCAGCAAGACAAGATCGTAGGCGACTTGCGGAACTCCTCCATGCGGAAACAATGATGCCCTCACCAGCTGATCCCGAGCGCTTCAGTTTTTGGTTAATGACCCTTTCAAAGAGGAGGCCATCTGAGAGATTAGAATTACTGCGTTTAAGAGATACAAAAGAGAGGATAACGCGTGGACTTATATACCTTAGACAAGAAGAACAAGGCTGTCGGCTTCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_72349.p1 GENE.R_Transcript_72349~~R_Transcript_72349.p1 ORF type:complete len:489 (+),score=78.84,LON_substr_bdg|PF02190.12|4.5e-22,zf-C3HC4_3|PF13920.2|8.5e-09,zf-C3HC4|PF00097.21|3.9e-08,zf-C3HC4_2|PF13923.2|5.4e-08,TPR_11|PF13414.2|8.3e-06,TPR_11|PF13414.2|23,TPR_11|PF13414.2|50,TPR_11|PF13414.2|4.4e+03,zf-RING_2|PF13639.2|3.1e-07,zf-RING_5|PF14634.2|8.2e-07,zf-C3HC4_4|PF15227.2|1.8e-06 R_Transcript_72349:242-1708(+)
MSGDENSLIGDFFDGIDDVEEFLCANEGGVSMSIDRFRQVFEFVQSGNQAFRASRFEEAINCYSTANVMKPGDPIILSNRCAAYIRLSQFLKSRPSTASESSPLYGLDPTTHAELALKDAEKVISLTSNSVKSHILHADALFLLERYKLARDVALSGLQLDPLSNHLQALLRILEKILTGSMGAKSRVKPERNDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDQSNKCPLCRTVLFITPRTCAISVTLNNIIQKNFPEEHAERKSENDSLTKLGVDLVPLFVMDAVLPCEKMMLNIFEPRYRLMVRRIMEGNHRMGMVILDSTTGHIADFACEVEITECEPFPDGRFYIEVEGRRRFRILRSWDQDGYRVAEVEWVQDIHPPEGTREKTDLQELTSNAAEYARLWMVRAKEAARQDRRRLAELLHAETMMPSPADPERFSFWLMTLSKRRPSERLELLRLRDTKERITRGLIYLRQEEQGCRLQ*

Click here to download the sequence:
Link to NCBI Protein BLAST