Transcript Information: R_Transcript_72485.p1


Annotated TAIR IDAT1G01040.2
Annotated Gene Namedicer-like 1
Annotated Gene Symbol(s)DCL1
Annotation TypeOrtholog
Chromosome Positionchr1:23519-31079 | Forward length=1910
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.0324107387988
Replicate 25.5756488207165
Replicate 36.3958114077269
Condition 2: 8 Hour
Replicate 18.6449841847128
Replicate 29.8401452715384
Replicate 311.678729746653
Condition 3: 24 Hour
Replicate 18.1635500663005
Replicate 26.4481232365977
Replicate 38.8790789878056


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_72485.p1 GENE.R_Transcript_72485~~R_Transcript_72485.p1 ORF type:complete len:1977 (+),score=476.54,Ribonuclease_3|PF00636.22|1e-30,Ribonuclease_3|PF00636.22|2.6e-24,Ribonucleas_3_3|PF14622.2|5.7e-07,Ribonucleas_3_3|PF14622.2|0.39,Ribonucleas_3_3|PF14622.2|3.5e-14,Dicer_dimer|PF03368.10|7e-21,Dicer_dimer|PF03368.10|4.1e+03,Dicer_dimer|PF03368.10|1.9e+02,PAZ|PF02170.18|4.1e-22,dsrm|PF00035.21|3.9e+02,dsrm|PF00035.21|2.7e-05,dsrm|PF00035.21|1.5e-08,Helicase_C|PF00271.27|1.6e-17,DND1_DSRM|PF14709.2|1.4e+03,DND1_DSRM|PF14709.2|1.1e-13,ResIII|PF04851.11|1.3e-13,DEAD|PF00270.25|4.5e-12,DEAD|PF00270.25|9.4e+03,DEAD|PF00270.25|1.6e+03 R_Transcript_72485:697-6627(+)
ATGGAGGTTGGAGATAAGGGCTCCGATGACGCAAGACCGACTTACTGGCTTGATGCTTGCGAAGAAGATGACATCATCCCTTGCGATCTCATCGGCGATTTCGGTAATGCCGGTTCCGATCATAGCTTGTTCGGCGGTATTGATCACATTCTTGATACTTTTCAAAACGGTGCCGTTTTGCCCTGTCATAATGGCGGTATGAGCATTAATATCACTCCTCCTTCTATTGCTGCTGAGATTATTACTAATAATTATAAGGAAGTAGTTGTCGTAAATTCTTCTGGTACTGGCAATGGTAGCTTATGTAAAGAAATTCAAGTTGAGAATATGAATTGCGATTTTGAGGTGCATAATAACTCATTTAATGGTGGTGTCAAAATGGATGTTGATACCAACGCTGACCATTGTGATGGAAGGAATTGTTTGGTTGATGATACTGATACTTGTAAAGTGAATGGAGTAGTGAAAGATGGAAATAATTTAAGTGATAGGGAGAGGGAGAGTGAAGAACGGAATGGGAAAAGGTCTCGTGTTAGTGGTGGTTATATTTATAGAGATGAGAGGTCATATTCGAGCCGAGGGCAGAATGGTAGTAGGGATTGGGTGAGTAGTAATGGAAGGAAGAGGGGTCGAGATTGGGACGATAATAATGCGAGGAGGGATAGAGATAGAGATAGAGAAAGGGGTGACCTGAGTAGTGGTAGTAGTAGGAGAAGAGAGTATTATAATGGTAGAAGAGAGAGTCGAGATAGGGAGTGGAGAGAAAGAGAAGTGAAGGGTTATTGGGAAAGGGAAAGGCCCGGGTCAAGGGAGATCGTGTATCGTTCTGGTTCGTATGAAGCAGATTGGAATAGAGTTGGGAACAAGATGGAGTTCGAGAAGGACCGCGAATGTAATGGGAGAGTGGAGAAGAATGATGTGAGTCATGGGGAGAAGAATTTGGAGGAGCAGGCTCGACAGTATCAGTTGGATGTACTTGAGCAAGCTAAGCAGAAAAATACTATTGCTTTCCTCGAGACTGGAGCCGGGAAAACTCTAATTGCTGTTTTACTCATCAAAAGCATTTGCAATAGATTGCAGCAGCAAGACAAGAAATTGCTCGCTGTGTTTCTAGTGCCCAAAGTTCCACTGGTTTATCAGCAAGCAGAAGTCATACGCGACCAAACTGGTTACAATGTAGGCCATTATTGTGGTGAGATGGGTCAAGACTTTTGGGATACTCGAAGGTGGCAGCGTGAGTTCGAAACCAAGCAGGTTTTAGTTATGACCGCTCAAATATTGTTGAATATTCTTAGGCACAGCATAATAAAAATGGACTTGATACACCTCCTTATTTTGGATGAGTGTCACCATGCTGTCAAGAAACATCCTTATTCATTGGTCATGTCTGAATTCTATCATACAACTCCTAAGGAGAAGAGACCCACTGTCTTTGGAATGACTGCTTCTCCTGTTAACTTAAAGGGTGTTTCCAGCCAAGTGGATTGTGCAATCAAGATACGCAATCTTGAGACCAAGCTGGACTCCATAGTTTGTACAATAAAAGACCGTAAAGAGCTGGAGAAACACGTTCCAACCCCTTCAGAAATTGTTGTGGAGTATGACAAAGCAGCAACATTGTGGTCTCTTCATGAACAAATCAAACAAATGGAGCTAGCTGTTGAAGAAGCAGCACGAGCAAGTTCAAGAAAAAGCAAATGGCAGTTCATGGGAGCTAGAGATGCAGGAGCCAGGGAAGAGCTTCGTCAAGTGTACGGTGTCTCGGAAAGGACTGAAAGTGATGGTGCTGCTAATTTGATTCAAAAATTAAGGGCCATTAACTATGCACTTAGTGAATTGGGGCAGTGGTGTGCGTACAAGGTTGCACAATCTTTCCTAGTAGCCTTACAGAATGATGAGAGGTCAAACTACCAGCTTGATGTCAAGTTTCAAGAATCCTATTTGAGCAAGGTTGTCACGCTCTTACAGTGTCAGCTCTCAGAGGGAGCTGCTTCTAACAAGGATGAAAACGGTGTGATAGAAGATAGTGGCTGTCCTCAGCATCATAATGTCGATGATATTGAAGAAGGAGAGCTTCCTGATTGTCATGTTGTTTCTGGTGGAGAACATGTTGATGTTGTCATTGGAGCTGCTGTAGCTGATGGAAAGGTCACTCCTAAGGTGCAGTCACTGATAAAAATACTCATGGGGTATCAGCACACGGAGGATTTTCGTGCAATCATATTTGTTGAGAGAGTTGTCTCTGCATTGGTTCTTCCGAAGGTTTTTGCGGAGCTTCCATCTTTGAGTTTTGTGAAGTGTGCAAGTTTGATTGGGCATAACAATAGTCAGGAAATGCGGACATCTCAAATGCAGGATACAATTGCCAAATTCCGAGATGGGCGTGTAACTTTGCTAGTTGCTACTAGTGTAGCTGAGGAAGGACTTGATATACGGCAATGCAATGTGGTCATTCGCTTTGATCTTGCAAAAACTGTTTTGGCTTACATTCAATCAAGGGGTCGTGCAAGAAAGCCAGGATCAGATTATATCTTGATGGTTGAAATGGGGAATGTGTCACATGAAACATTTTTGAAGAATGCTAGGAATAGTGAAGAAACTTTGCGGAGAGAAGCAATTGAGAGAACTGATGTAAGTCATCTCAAGGGTAGCTCAAGGTTAATATCAGTGGATGCTGGTCCTGGTTCAGTGTATCAAGTTGCTTCAACTGGCGCTACTGTGAGCTTGAATTCTGCTGTGGGCCTTATCCATTTTTACTGCTCACAGCTGCCCAGTGACAGATATTCAATTCTTCGTCCTGAATTTTTCATGGAGCGGCATGAGAATCCAGGGGGAGCTATAGAGTATTCTTGCAGGCTTCAACTCCCTTGCAATGCTCCATTTGAAAAGCTGGAGGGCCCAGTTTGCAGTTCAATGAGGCTTGCGCAGCAGGCTGTTTGCCTAGCTGCTTGCAAGAAGCTCCACGAGATGGGGGCATTTACTGACATGCTCTTGCCTGACAAGGGAAGTGGTGAAGATGGTGAAAAGGTTGAGCAGAATGATGAAGGAGACCCACTTCCAGGAACTGCCAGACACAGAGAATTTTATCCCGAAGGCGTAGCCTCTATCCTTCGGGGGGAATGGATCTTGTCTGGAAGAGATGTTTGTGACAATTCAAAATTATTTCATCTTTATGTGTATGCTGTGAAGTGGGAAAATATAGGATTCTCAAAGGATCCTTTTTTGACCCAAGTTTCAGATTTTGCAGTATTATTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCGATGGATCTCTTTATCGCTCGAACCATGAAGTGTAAGGTATCTCTTGTATTTCAGGGTTCAATAGATATCACAAAAAGCCAGCTAGCATCCCTGAAGAGTTTTCATGTGAGATTAATGAGCATTGTACTGGATGTGGATGTCGAACCACAAACAACTCCATGGGATCCTGCAAAGGCTTATTTATTTGTTCCTATGGTTGGCGATAAATCTTTAGATCCTCTAGGAGAAATTAACTGGAATCTTATTGAGTATATAAAAAAAGCAGATGCATGGACAAATCCCTTACAAAAGGCACGTCCTGATGTTTACTTGGGAACCAATGAGCGGAGTCTGGGTGGGGATAGAAGAGAATATGGGTTTGGGAAGCTGCGTTATGGTATGGCGTTTGGACAGAAGTCTCATCCTACTTATGGTATCAGAGGAGCAATTGCGCAATATGATGTTGTCAAAGCATCTGGGTTGATTCTTAAACGTGATGACATTTTGGATGACAACTTGGACATTTCTGAAGGCAAATTGATGCTGGCTGATACCTGTATTAGTGCAGAAGATTTAGTGGGTAAAATTGTGACTGCTGCTCACTCTGGAAAAAGGTTTTATGTGGATTCTGTACGTTATGATATGACTGCAGAAAACTCATTTCCCAGGAAAGAAGGTTATCTTGGTCCTTTGGAATATAGTTCATATGAGGACTACTACAAGCAGAAGTATGGAGTTGAATTGATATACAAGCAGCAGCCATTACTTAGAGGACGTGGCGTTTCATATTGCAAGAATCTCCTCTCTCCAAGATTTGAACATTCAGATGAACCTGAAGGTGAGTCTGAGGAGATACTTGACAAAACATACTATGTGTTTTTACCTGCTGAGTTATGTTTTGTACATCCGCTTCCTGGGATGCTTGTCCGAGGTGCCCAAAGACTGCCATCAATAATGAGAAGGGTGGAAAGCATGTTGCTTGCTATTGAGCTCAAGAATATTATCAGCTACCCTGTTCCTGCTTCTAAGATTCTGGAAGCTTTGACTGCGGCCTCATGTCAAGAGACATTTTGCTATGAGAGAGCAGAGCTTCTGGGAGATGCGTATTTGAAATGGGTAGTTAGTAGATATCTTTTTCTTAGATATCCTCAAAAGCATGAGGGCCAACTGACACGAATGAGACAGCAGATGGTAAGCAATATGGTGCTGTACCAGCATGCTTTGAACAAAGGACTTCAGTCATATATCCAAGCAGATCGCTTTGCCCCATCTAGATGGGCTGCACCTGGTGTTCTACCAGTATTTGATGAGGACAGCAAGGAAGAGGAGTCGTCCTTATTCGATCAGGAGAAATCAGCTGCCCAGGCTAATATGGCGAATGATTCTGATGATTTTGATGATGATGAAATGGAAGATGGTGAAGTTGAAAGTGATTCAAGTTCATACAGAGTTCTTTCTAGCAAGACGTTGGCAGATGTTGTTGAGGCACTAATTGGAGTTTACTATGTTGAAGGTGGAAAGAGTGCTGCCAACCACTTAATGAAATGGATTGGGATTGACATAGAGTATAATCCAGAAGAGATTGAATGCCCAAATAGGGTGACCAACGTTCCAGATGGTGTACTTAGGAGTGTCGATTTTGAAGCCTTGGAAGGTGCTTTAAAGATCAAGTTTAGTGACAGAACGCTACTAGTAGAAGCAATTACTCATGCTTCACGCCCGTCTTCTGGAGTCTCCTGCTACCAGCGGCTGGAGTTTGTAGGTGATGCCGTATTGGACCACCTTATTACTAGGCACTTATTCTTCAAGTATACAGATTTGCCCCCTGGCCGTTTGACGGATTTGCGTGCTGCAGCTGTAAACAATGAAAATTTTGCTCGGGTTGCAGTTAAGCACAAGCTTCATTTGCATCTACGACATGGATCCACTGCCCTCGAGAAGCAGATACGAGACTTTGTGAAGGAAGTTCAAGAAGAGTTGTCAAAACCTGGATTTAATTCGTTCGGCTTAGGAGATTGTAAGGCTCCCAAGGTTCTTGGTGATATTGTTGAATCGATTGCTGGAGCTATTTTCCTTGACAGTGGACGTGATACCACTATTGTTTGGAGAGTTTTTGAGCCATTACTGCAACCAATGGTTACTCCGGAAACACTTCCAATGCATCCAGTAAGAGAGCTGCAGGAACGATGCCAGCAGCAAGCTGAAGGTCTGGAATATAAGGCTACTCGAAACGGGAATTTAGCCACTGTTGAAGTTTATGTTGATGGTGTCCAAATTGGGGTAGCTCAAAATGCACAGAAGAAGATGGCACAAAAGTTAGCTGCTCGAAATGCTCTGCTTGTTCTTAAGGAGAAAGAAGAAGCTGAGGCCAAGGATAAAGCTGAGGAGAGTGAAAAGAAGACGAAGAATGGTGGACAGGCATTCACCAGGCAGACACTAAATGATATTTGTCTACGTAGAAATTGGCCCATGCCACTCTACAGGTGTGTGAATGAAGGTGGCCCTGCACACGCTAAGAGGTTTACCTTTGCTGTTCGAGTTAATACCACAGACAGGGGTTGGACTGATGAATGCATCGGAGAGCCTATGCCTAGTGTTAAGAAGGCCAAAGATTCTGCTGCAACTCTTCTGTTGGAGCTTCTAAATAAGTGGTACTCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_72485.p1 GENE.R_Transcript_72485~~R_Transcript_72485.p1 ORF type:complete len:1977 (+),score=476.54,Ribonuclease_3|PF00636.22|1e-30,Ribonuclease_3|PF00636.22|2.6e-24,Ribonucleas_3_3|PF14622.2|5.7e-07,Ribonucleas_3_3|PF14622.2|0.39,Ribonucleas_3_3|PF14622.2|3.5e-14,Dicer_dimer|PF03368.10|7e-21,Dicer_dimer|PF03368.10|4.1e+03,Dicer_dimer|PF03368.10|1.9e+02,PAZ|PF02170.18|4.1e-22,dsrm|PF00035.21|3.9e+02,dsrm|PF00035.21|2.7e-05,dsrm|PF00035.21|1.5e-08,Helicase_C|PF00271.27|1.6e-17,DND1_DSRM|PF14709.2|1.4e+03,DND1_DSRM|PF14709.2|1.1e-13,ResIII|PF04851.11|1.3e-13,DEAD|PF00270.25|4.5e-12,DEAD|PF00270.25|9.4e+03,DEAD|PF00270.25|1.6e+03 R_Transcript_72485:697-6627(+)
MEVGDKGSDDARPTYWLDACEEDDIIPCDLIGDFGNAGSDHSLFGGIDHILDTFQNGAVLPCHNGGMSINITPPSIAAEIITNNYKEVVVVNSSGTGNGSLCKEIQVENMNCDFEVHNNSFNGGVKMDVDTNADHCDGRNCLVDDTDTCKVNGVVKDGNNLSDRERESEERNGKRSRVSGGYIYRDERSYSSRGQNGSRDWVSSNGRKRGRDWDDNNARRDRDRDRERGDLSSGSSRRREYYNGRRESRDREWREREVKGYWERERPGSREIVYRSGSYEADWNRVGNKMEFEKDRECNGRVEKNDVSHGEKNLEEQARQYQLDVLEQAKQKNTIAFLETGAGKTLIAVLLIKSICNRLQQQDKKLLAVFLVPKVPLVYQQAEVIRDQTGYNVGHYCGEMGQDFWDTRRWQREFETKQVLVMTAQILLNILRHSIIKMDLIHLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPTVFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSIVCTIKDRKELEKHVPTPSEIVVEYDKAATLWSLHEQIKQMELAVEEAARASSRKSKWQFMGARDAGAREELRQVYGVSERTESDGAANLIQKLRAINYALSELGQWCAYKVAQSFLVALQNDERSNYQLDVKFQESYLSKVVTLLQCQLSEGAASNKDENGVIEDSGCPQHHNVDDIEEGELPDCHVVSGGEHVDVVIGAAVADGKVTPKVQSLIKILMGYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTSQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVEMGNVSHETFLKNARNSEETLRREAIERTDVSHLKGSSRLISVDAGPGSVYQVASTGATVSLNSAVGLIHFYCSQLPSDRYSILRPEFFMERHENPGGAIEYSCRLQLPCNAPFEKLEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEDGEKVEQNDEGDPLPGTARHREFYPEGVASILRGEWILSGRDVCDNSKLFHLYVYAVKWENIGFSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTMKCKVSLVFQGSIDITKSQLASLKSFHVRLMSIVLDVDVEPQTTPWDPAKAYLFVPMVGDKSLDPLGEINWNLIEYIKKADAWTNPLQKARPDVYLGTNERSLGGDRREYGFGKLRYGMAFGQKSHPTYGIRGAIAQYDVVKASGLILKRDDILDDNLDISEGKLMLADTCISAEDLVGKIVTAAHSGKRFYVDSVRYDMTAENSFPRKEGYLGPLEYSSYEDYYKQKYGVELIYKQQPLLRGRGVSYCKNLLSPRFEHSDEPEGESEEILDKTYYVFLPAELCFVHPLPGMLVRGAQRLPSIMRRVESMLLAIELKNIISYPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSRYLFLRYPQKHEGQLTRMRQQMVSNMVLYQHALNKGLQSYIQADRFAPSRWAAPGVLPVFDEDSKEEESSLFDQEKSAAQANMANDSDDFDDDEMEDGEVESDSSSYRVLSSKTLADVVEALIGVYYVEGGKSAANHLMKWIGIDIEYNPEEIECPNRVTNVPDGVLRSVDFEALEGALKIKFSDRTLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFKYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHLHLRHGSTALEKQIRDFVKEVQEELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTIVWRVFEPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKATRNGNLATVEVYVDGVQIGVAQNAQKKMAQKLAARNALLVLKEKEEAEAKDKAEESEKKTKNGGQAFTRQTLNDICLRRNWPMPLYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECIGEPMPSVKKAKDSAATLLLELLNKWYS*

Click here to download the sequence:
Link to NCBI Protein BLAST