Transcript Information: R_Transcript_73627.p1


Annotated TAIR IDAT3G13682.1
Annotated Gene NameLSD1-like2
Annotated Gene Symbol(s)LDL2
Annotation TypeOrtholog
Chromosome Positionchr3:4479193-4481509 | Reverse length=746
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.149935010165
Replicate 23.6889140757829
Replicate 36.0822381199823
Condition 2: 8 Hour
Replicate 14.7548509210635
Replicate 25.9668403327866
Replicate 38.0807038032634
Condition 3: 24 Hour
Replicate 18.0670762517428
Replicate 25.3317204451462
Replicate 37.0838674349932


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_73627.p1 GENE.R_Transcript_73627~~R_Transcript_73627.p1 ORF type:complete len:757 (+),score=141.29,Amino_oxidase|PF01593.20|3.4e-94,SWIRM|PF04433.13|1.8e-15,NAD_binding_8|PF13450.2|1.2e-12,Pyr_redox_2|PF07992.10|7.3e-06,Pyr_redox_2|PF07992.10|1.1e+03 R_Transcript_73627:425-2695(+)
ATGGAGACCCCAGTTTCGGATGGGTTTGTGCCAAAGAGGTCATTGAGGAGGAAAGTGAGTTTGAAAAATTATGATGAGAAGTTGATGGATGAACTCATAGAGAAGCACTTAGGTGGTCCCTTGAAGAAAAGGAACAGGACTAGGGAAGACTTGGAGAAAGAAACTGAAAGGGAGGCGATGATAGCTATATCGCTTGGGTTTCCTATCGATGCTTTGCTTGATGAGGAGATAAAGGCAGGGGTTGTGAGGGACATGGGTGGGAAGGAACAAAATGACTACATTGTTGTAAGGAATCATATTCTTGCTAGGTGGAGAAGTAATGTTCGGATGTGGTTGTCCAAAGGGCAGATCAGGGAAACAGTCACTAGCGAGTGTGAATATTTGATATCGTCTGCTTATGACTTCCTTTTGTACAATGGGTATATTAATTTTGGTGTTTCACCAGCTTTCACTTCTCATATTCCTAAGGAGGCATCCGAGGGGTCCGTTGTGATAATTGGTGCTGGATTAGCGGGCCTTGCTGCAGCAAGGCAATTATTGTCGTTTGGTTTTAAGGTTCTTGTTCTTGAAGGTAGGAACCGCCCTGGGGGCAGAGTTTATACTCAGAGGTTGGGTAAAAAGGGCCAATATGTTGCTGTTGAGTTAGGCGGAAGTGTTATTACTGGTATTCATGCTAATCCTTTGGGAGTTTTGGCCAGGCAATTGTCAATACCTCTGCATAAAGTGAGAGATAAATGCCCTTTGTACAAGCCAGACGGGACTCTGGTTGATGACGAGATAGATTCCACAGTTGAATTCATCTTTAATAGGTTGTTGGATAAAGTAACCGAGTTAAGGAAAATAATGGGTGGTTTTGCGAATGATATTTCTCTGGGTTCTGTGTTGGATACTCTTCAAGATCTTTATTCTGTGGGCAAAAGTCAGGAGGAAAAACAGCTCCTTGATTGGCATTATGCCAACTTGGAATATGCAAATGCCGGTTGTCTATCAGAACTCTCAGCTGCCTATTGGGATCAGGATGATCCCTATGAGATGGGTGGTGACCATTGTTTCCTTGCAGGTGGAAATTGGAGTTTGATCAAATCGTTATGTGAAGGAGTTCCTATTTTATATGGAAAGAAAGTCGATACAGTAAAATACAACTGCGACGGTGTTGAGGTTGTAGCCGGAAACCAAGTGTTCCAAGCGGATGTTGTTCTGTGTACTGTACCTCTTGGAGTTCTAAAGCGGAAGACAATCACATTTGAACCAGAGTTGCCAGAAAGAAAGCTTGATGCCATAGAAAGGTTGGGTTTTGGCTTGCTTAATAAAGTCGCTATGGTATTTCCTCATGTATTTTGGGGGGAGGATCTGGACACATTTGGTTGTCTGGGCAATAATAGCCATCAACGAGGCGAATTTTTCCTGTTTTACAGTTACCACACAGTTTCTGGTGGTGCTGTTCTTGTAGCATTGGTGGCAGGAGAAGCTGCTCAGGATTTTGAGCACACCGACGCATCCATTCTGCTACACCAAGTCCTGAAGGTGCTTAGAGGTATCTATAATCCAAAGGGGATTGACGTGCCTAATCCCATACAGACAGTGTGCACAAAGTGGGGCAGTGATCCCTTGTCCTATGGCTCATATTCTCATGTTCGTGTTGGCTCAACTGGAGTTGACTATGACATCCTAGCTGAAAGTGTTGAAAACCGAGTGTTCTTTGCTGGTGAAGCCACTAGCAGGAAATATCCCGCCACAATGCATGGCGCTTTCTTGAGTGGCTTAAGGGAAGCTGGTCGCATTTTTCGAACCACAAGGGGCCTGCAGCTGTGTGTCAGAAAGGGAGGCCAAAAAAATCTTGGACCAAACTTCGATACTTTACTTGATTTGTTTAGAAGACCTGACTTGGCCATTGGAAAGTTCTTATTTATTCTTGATCCTTCGACAGAAGATCCCAGTTCACTGGGCCTCCTGAGAGTTGCCTTTGATGACTTAAGCAGTGAATTCTGCAGTGAATGCAATTATTTGGTTGAACAGGGTACAAAATGCTTGAATCATGGGAATTTGCCTTTGCAACTTTATACAATCATATCTCGGGAACAAGTTGAACAACTCCAGCGTGTACAAGGAGACCAGGATAAGTTACTGTATTTATTCAACAATCTCGGTTTGAAGCTCATGGGACCGAGTGCCCTCGGTGCGCTAGGCAACTCCGTGGTTGCTAGCATTTGTAACGCACGGAGAGGTAGAGGCAGGTCTCGTCTGGGAAGTATACCCCAAGGTGCTGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_73627.p1 GENE.R_Transcript_73627~~R_Transcript_73627.p1 ORF type:complete len:757 (+),score=141.29,Amino_oxidase|PF01593.20|3.4e-94,SWIRM|PF04433.13|1.8e-15,NAD_binding_8|PF13450.2|1.2e-12,Pyr_redox_2|PF07992.10|7.3e-06,Pyr_redox_2|PF07992.10|1.1e+03 R_Transcript_73627:425-2695(+)
METPVSDGFVPKRSLRRKVSLKNYDEKLMDELIEKHLGGPLKKRNRTREDLEKETEREAMIAISLGFPIDALLDEEIKAGVVRDMGGKEQNDYIVVRNHILARWRSNVRMWLSKGQIRETVTSECEYLISSAYDFLLYNGYINFGVSPAFTSHIPKEASEGSVVIIGAGLAGLAAARQLLSFGFKVLVLEGRNRPGGRVYTQRLGKKGQYVAVELGGSVITGIHANPLGVLARQLSIPLHKVRDKCPLYKPDGTLVDDEIDSTVEFIFNRLLDKVTELRKIMGGFANDISLGSVLDTLQDLYSVGKSQEEKQLLDWHYANLEYANAGCLSELSAAYWDQDDPYEMGGDHCFLAGGNWSLIKSLCEGVPILYGKKVDTVKYNCDGVEVVAGNQVFQADVVLCTVPLGVLKRKTITFEPELPERKLDAIERLGFGLLNKVAMVFPHVFWGEDLDTFGCLGNNSHQRGEFFLFYSYHTVSGGAVLVALVAGEAAQDFEHTDASILLHQVLKVLRGIYNPKGIDVPNPIQTVCTKWGSDPLSYGSYSHVRVGSTGVDYDILAESVENRVFFAGEATSRKYPATMHGAFLSGLREAGRIFRTTRGLQLCVRKGGQKNLGPNFDTLLDLFRRPDLAIGKFLFILDPSTEDPSSLGLLRVAFDDLSSEFCSECNYLVEQGTKCLNHGNLPLQLYTIISREQVEQLQRVQGDQDKLLYLFNNLGLKLMGPSALGALGNSVVASICNARRGRGRSRLGSIPQGAV*

Click here to download the sequence:
Link to NCBI Protein BLAST