Transcript Information: R_Transcript_74060.p1


Annotated TAIR IDAT5G57060.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23090666-23091796 | Forward length=137
E-Value5.2E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.08075245304
Replicate 211.750223168754
Replicate 320.384894925016
Condition 2: 8 Hour
Replicate 19.8842023640256
Replicate 221.130007611395
Replicate 327.643737275085
Condition 3: 24 Hour
Replicate 116.007278433995
Replicate 216.187345974736
Replicate 313.453910220386


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_74060.p1 GENE.R_Transcript_74060~~R_Transcript_74060.p1 ORF type:complete len:109 (+),score=17.13 R_Transcript_74060:250-576(+)
ATGGATAAGAGACTAGGAAAGGATGGAGCTCCAAACGGGAAGGCCAAGTACACTCTTATTAGAGATGTAGAGGACTGCCAACCGGGAATCTTTGACAAGCCTCTTCCTTGCTTTGGCTGTGGTGTAGGGTGGTTTTCCTTTCTTGTAGGTTTTATGTTCCCTCCATTGTGGTTCTATGCAACATTCCTATATTTCGGGAAAGCTTACCGTAAAGATCCAAGAGAAAGAGGTGGTCTTGCTGCTTCTGCAATAGCTGCTTTGGGTTGTTCTATTGTGGTATCAATTATACTTCTCGTCAGGCTATTTTCGTCTGGTCATACAGCGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_74060.p1 GENE.R_Transcript_74060~~R_Transcript_74060.p1 ORF type:complete len:109 (+),score=17.13 R_Transcript_74060:250-576(+)
MDKRLGKDGAPNGKAKYTLIRDVEDCQPGIFDKPLPCFGCGVGWFSFLVGFMFPPLWFYATFLYFGKAYRKDPRERGGLAASAIAALGCSIVVSIILLVRLFSSGHTA*

Click here to download the sequence:
Link to NCBI Protein BLAST