Transcript Information: R_Transcript_74062.p1


Annotated TAIR IDAT5G57060.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23090666-23091796 | Forward length=137
E-Value2.1E-45
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.168640636479
Replicate 210.909842373175
Replicate 37.4110033399317
Condition 2: 8 Hour
Replicate 114.403449968968
Replicate 214.030357233685
Replicate 319.575266355319
Condition 3: 24 Hour
Replicate 111.7039801553
Replicate 211.892541558645
Replicate 312.875120404057


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_74062.p1 GENE.R_Transcript_74062~~R_Transcript_74062.p1 ORF type:complete len:102 (+),score=13.92 R_Transcript_74062:264-569(+)
ATGGAGCTCCAAACGGGAAGGGCCAAGTACACTCTTATTAGAGATGTAGAGGACTGCCAACCGGGAATCTTTGACAAGCCTCTTCCTTGCTTTGGCTGTGGTGTAGGGTGGTTTTCCTTTCTTGTAGGTTTTATGTTCCCTCCATTGTGGTTCTATGCAACATTCCTATATTTCGGGAAAGCTTACCGTAAAGATCCAAGAGAAAGAGGTGGTCTTGCTGCTTCTGCAATAGCTGCTTTGGGTTGTTCTATTGTGGTATCAATTATACTTCTCGTCAGGCTATTTTCGTCTGGTCATACAGCGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_74062.p1 GENE.R_Transcript_74062~~R_Transcript_74062.p1 ORF type:complete len:102 (+),score=13.92 R_Transcript_74062:264-569(+)
MELQTGRAKYTLIRDVEDCQPGIFDKPLPCFGCGVGWFSFLVGFMFPPLWFYATFLYFGKAYRKDPRERGGLAASAIAALGCSIVVSIILLVRLFSSGHTA*

Click here to download the sequence:
Link to NCBI Protein BLAST