Transcript Information: R_Transcript_74367.p1


Annotated TAIR IDAT4G38350.2
Annotated Gene NamePatched family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:17958324-17966846 | Reverse length=1297
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.110032799147
Replicate 214.040970487858
Replicate 316.775764383839
Condition 2: 8 Hour
Replicate 117.47633495071
Replicate 220.331228485547
Replicate 325.741772082287
Condition 3: 24 Hour
Replicate 124.311409515761
Replicate 215.587541388143
Replicate 324.995113498148


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_74367.p1 GENE.R_Transcript_74367~~R_Transcript_74367.p1 ORF type:complete len:1289 (+),score=226.15,Patched|PF02460.14|1.1e-56,Patched|PF02460.14|5.8e-33,NPC1_N|PF16414.1|1.5e-63,Sterol-sensing|PF12349.4|5.4e+03,Sterol-sensing|PF12349.4|4.1e-49,Sterol-sensing|PF12349.4|2.7e+03,Sterol-sensing|PF12349.4|36 R_Transcript_74367:465-4331(+)
ATGGCGTTTCGTTTAGGGCTTCTTCTCTTCACCCTTTTCTCTCTCCAGGTCTTATTCATAACTTCAGTAGCTGATGCAGCAAGATCTAATTCACGTTTTCTTTTGACACCTAATACCACATCTGGGGTTAGGCATGCACCTGGATATTGTGCAATGTATGACATATGTGGTGCACGAAGTGACGGGAAAGTCTTGAATTGCCCTTTAAATACACCTGCTGTTAAGCCTGATGCTCTGTTCTCATCTAAAATTCAAAGCTTGTGCCCCACAATTACGGGCGATGTTTGTTGTACAGAAGACCAATTTGAGACCCTGCGGAGCCAAGTCCAGCAAGCAGTTCCTTTTCTTGTGGGCTGTCCGGCATGCTTAAGGAATTTTTTGAATCTCTTTTGCGAGATGTCCTGCTCCCCCAACCAGAGTTTATTCATCAATGTGACTACTGTGAAAAAGGTTAATAACAATTTGACCGTGGATGCAATTGAATTTTATATTACTGACACTTTTGGTGAAGGGCTGTACAACTCTTGTAAGGATGTGAAGTTTGGCACTATGAATACTCGAGCCATAGAATTTGTTGCTGGTGGTGCCCAAGATTTCAAAGGGTGGTATTCTTTCATTGGTAGACAAGTGGGCCTTAATGTCCCCGGTTCACCCTATGCTATAAATTTCACCTCAAGTGTGCCTGAATCGTCAAGGATGAGTCCCATGAATGATACTGCTTACTCATGCAGTGACAATTTGTTGGGTTGCTCTTGTGGCGACTGTCCTTCATCTCCTACATGTTCTAGTTCAGCTGCTCCTTCAGTTACTAAGGGCAGGACCTGTTCAATAAATATGGGTTCTTTGAAGGCAAAATGCTCTGATGTTGCTCTAGCGATTGTGTATATTGTTTTGGTTTCCGTGTTTCTTGGATGGGGTTTTGTTCATCGGAGAAAGGAAATGAGCCCAGTTTCAAGAACTGAACCACTGAAGAATGCCACGAATACTGGTGGAATTCATTCAGTGGACACAAAAGATGGGGACCTCCCCTTGCCAATTCTTCTAGATGCAGCTCAAGAAACTGGTGGAGTAAAACTTTCAGTGGTTCAAGCATACATGTCAGACTTTTTTGGAAAATATGGAGCGTGGGTAGCCAGGAGACCAACTCTTGTTCTCTTTTCATCCTTGGCTTTCGTACTTGTTCTATGTTTAGGATTAATTCGTTTCAGAGTCGAGACACAACCTGAAAAGCTTTGGGTGGGACCTGGGAGCAGGGCTGCAAAAGAGAAGCAGTTTTTTGACACCCATCTGGCACCTTTCTACAGAATTGAACAGCTTGTAGTAGCAACAATTCCTGATGGACAAGGTAAATCATCCAGTATCTTGACAGAGGATAACATTAAACTACTCTTTGAAATACAGAAGAAGGTTGATGGAATTAAAGCAAATTTTTCTGGCTCAATGGTAACACTGACAGACATTTGTAACAAGCCACTCGGCGAAGCTTGTGCTACTCAGAGCATCTTACAGTACTTCAAAATGGACCCTGACAATTTCGAGAACTACGGTGGAGTGGATCATGCTGAGTACTGTTTTCAGCATACTTCTGCAGAAACATGTTTGAGTGCATTCAAAGGCCCACTTGATCCTAGCACTGCACTAGGTGGTTACTCAGGGAGCAATTACAATGAGGCTTCAGCGTTTATAGTTACCTATCCAGTGAACAATGCTGTTGATAAAGAAAGCAATGAAGCAGGAAGAGCAGTGGCATGGGAGAAAGCTTTCATTCAGCTAGCAAAGGATGAGTTGATGACAATGGTTCAGTCAAAGAACTTGACACTTTCTTTTTCGTCGGAGAGCTCCATTGAAGAAGAACTGAAGAGAGAGAGCACTGCAGATGTTATTACTATAGTGATAAGCTATCTGGTGATGTTTGCATATATATCCCTTACTCTCGGCGACACACCCCGGTTGTCTTACTTCTACATTTCATCTAAGGTACTACTTGGACTCTCTGGAGTTATCTTGGTCATGCTCTCTGTGCTCGGATCAGTTGGATTTTTCAGTGCTACTGGAGTTAAATCTACGCTTATCATAATGGAAGTCATTCCTTTCCTTGTCTTGGCTGTTGGGGTGGATAATATGTGCATCTTAGTTCATGCTGTAAAAAGACAGCCACAGGAGTTGTCTTTAGAGGGACGAATAAGTAATGCTCTAGTGGAAGTCGGACCATCTATTTCACTTGCCAGTCTATCAGAGGTATTAGCATTTGCAGTTGGAACTTTCATCCCAATGCCAGCTGTTCGTGTGTTCTCCATGTTTGCAGCATTAGCGGTTCTTCTGGACTTCCTGCTGCAAGTTACTGCATTTGTTGCATTGATAGTATTGGACTTTCTGAGGACAGAAGATAATAGAGTTGATTGTTTTCCTTGCATGAAACTCTCCTCAAGACACTCAACAAATGGCATTGGTGATAGAAAATCTGGGCCGCTAGCTCGTTATATGAAGGATGTTCATGCACCCATTCTGAGTCTCTGGGGAGTAAAAATATTGGTTGTTTCGGTGTTTGTTGCTTTTGCATTGGTTAGCATTGCATTGTGCACCAGGATTGAACCTGGTCTGGAGCAACAGGTTGTTCTTCCCAGGGACTCTTATCTACAGGGATATTTCAAAAATCTGTCAGAGTTACTTAGGATTGGACCTCCAGTATATTTTGTGGTGAAAGACTATAATTATAGCTCAAAATCGGAGGAAACCAATAAGTTATGCTCTATCAGCCACTGTAATTCAAATTCTCTTGTAAATGAGATTTCAAAAGTGTCTCTAATCCCAAAATCAAGTTATATAGCTAAACCAGCAGCTTCATGGCTTGATGACTTTCTAGTATGGGTATCTCCTGAAGCTTTTGGTTGCTGCAGAAAGTTCACAAACGAAACTTTTTGCCCTCCTGATGATCAGCCTCCTTGCTGTCCTCCAGGTTCAGCTACATGTGGTGTCAGTGAAGTATGCAAAGACTGTACAACGTGCTTTCTTCACTCTGACTTGGTTGATGATCGTCCTACTACTTCCCAATTCAAAGATAAGCTTCCCTGGTTTCTCAAGGCTCTACCTTCCGCTGATTGTGCCAAAGGAGGACATGGGGCCTATACAAACAGCATCGACTTGCAAGGTTATGAAAATGGTGTAATTCAAGCATCAGAATTTCGAACTTTCCACACTCCCCTGAACAGACAAATCGACTATGTCAATGCGTTGAAAGCAGCACGAGAATTTACATCTAGAGTTTCTAAATCTTTGCAGATTGAGATATTTCCATATTCAGTATTTTACATGTTCTTTGAACAATACCTGGATATTTGGAGAACAGCATTGATCAACCTTGCCATTGCTATCGGGGCTGTTTTTGTTGTATGCTTGATTATTACATGGAGTGTATGGAGCTCGTTGATCATTCTTCTTGTTATAACAATGATAGTGCTGGACCTAATGGGGGTTATGGCGATTCTAAGAATTCAACTGAATGCAGTCTCAGTGGTTAATCTTGTAATGTCAGTTGGCATTGCTGTTGAGTTCTGTGTACATATAACACATGCTTTCTTGGTAAGTGGTGGAAATAGGGATCAACGCATGAAGGAAGCTTTGGGGACAATGGGGGCTTCTGTATTCAGTGGCATCACACTAACAAAGTTAGTCGGGGTCATTGTCCTGGCCTTCTCTAGATCAGCTGTCTTTGTGGTGTATTACTTCCAGATGTACTTGGCTCTAGTCATTCTTGGTTTCCTGCATGGTCTAATATTCTTACCTGTGGTATTGAGCTTGTTTGGACCGCCTTCACGTTACATTGCAGAGAAGCAAGATCCACGACCATCTGCATCTTCACAGTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_74367.p1 GENE.R_Transcript_74367~~R_Transcript_74367.p1 ORF type:complete len:1289 (+),score=226.15,Patched|PF02460.14|1.1e-56,Patched|PF02460.14|5.8e-33,NPC1_N|PF16414.1|1.5e-63,Sterol-sensing|PF12349.4|5.4e+03,Sterol-sensing|PF12349.4|4.1e-49,Sterol-sensing|PF12349.4|2.7e+03,Sterol-sensing|PF12349.4|36 R_Transcript_74367:465-4331(+)
MAFRLGLLLFTLFSLQVLFITSVADAARSNSRFLLTPNTTSGVRHAPGYCAMYDICGARSDGKVLNCPLNTPAVKPDALFSSKIQSLCPTITGDVCCTEDQFETLRSQVQQAVPFLVGCPACLRNFLNLFCEMSCSPNQSLFINVTTVKKVNNNLTVDAIEFYITDTFGEGLYNSCKDVKFGTMNTRAIEFVAGGAQDFKGWYSFIGRQVGLNVPGSPYAINFTSSVPESSRMSPMNDTAYSCSDNLLGCSCGDCPSSPTCSSSAAPSVTKGRTCSINMGSLKAKCSDVALAIVYIVLVSVFLGWGFVHRRKEMSPVSRTEPLKNATNTGGIHSVDTKDGDLPLPILLDAAQETGGVKLSVVQAYMSDFFGKYGAWVARRPTLVLFSSLAFVLVLCLGLIRFRVETQPEKLWVGPGSRAAKEKQFFDTHLAPFYRIEQLVVATIPDGQGKSSSILTEDNIKLLFEIQKKVDGIKANFSGSMVTLTDICNKPLGEACATQSILQYFKMDPDNFENYGGVDHAEYCFQHTSAETCLSAFKGPLDPSTALGGYSGSNYNEASAFIVTYPVNNAVDKESNEAGRAVAWEKAFIQLAKDELMTMVQSKNLTLSFSSESSIEEELKRESTADVITIVISYLVMFAYISLTLGDTPRLSYFYISSKVLLGLSGVILVMLSVLGSVGFFSATGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPQELSLEGRISNALVEVGPSISLASLSEVLAFAVGTFIPMPAVRVFSMFAALAVLLDFLLQVTAFVALIVLDFLRTEDNRVDCFPCMKLSSRHSTNGIGDRKSGPLARYMKDVHAPILSLWGVKILVVSVFVAFALVSIALCTRIEPGLEQQVVLPRDSYLQGYFKNLSELLRIGPPVYFVVKDYNYSSKSEETNKLCSISHCNSNSLVNEISKVSLIPKSSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNETFCPPDDQPPCCPPGSATCGVSEVCKDCTTCFLHSDLVDDRPTTSQFKDKLPWFLKALPSADCAKGGHGAYTNSIDLQGYENGVIQASEFRTFHTPLNRQIDYVNALKAAREFTSRVSKSLQIEIFPYSVFYMFFEQYLDIWRTALINLAIAIGAVFVVCLIITWSVWSSLIILLVITMIVLDLMGVMAILRIQLNAVSVVNLVMSVGIAVEFCVHITHAFLVSGGNRDQRMKEALGTMGASVFSGITLTKLVGVIVLAFSRSAVFVVYYFQMYLALVILGFLHGLIFLPVVLSLFGPPSRYIAEKQDPRPSASSQF*

Click here to download the sequence:
Link to NCBI Protein BLAST