Transcript Information: R_Transcript_74837.p1


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeOrtholog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value4E-283
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.687588980066
Replicate 28.1038352483957
Replicate 310.850559913967
Condition 2: 8 Hour
Replicate 19.5043817887333
Replicate 214.073625193904
Replicate 313.414677147084
Condition 3: 24 Hour
Replicate 110.421636175734
Replicate 213.978003989862
Replicate 311.759841333969


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_74837.p1 GENE.R_Transcript_74837~~R_Transcript_74837.p1 ORF type:complete len:456 (+),score=113.24,AAA|PF00004.25|2.2e-42,MIT|PF04212.14|1e-21,MIT|PF04212.14|8.4e+03,Vps4_C|PF09336.6|2.3e-17 R_Transcript_74837:312-1679(+)
ATGTACAGTAATTTCAAAGAACAAGCGATCGAGTACGTAAAACAAGCGGTACAAGAAGACAATGCGGGGAACTACGCAAAAGCTTTCCCTCTTTACATGAACGCCTTGGAGTACTTCAAGACTCATCTTAAGTACGAGAAGAACCCCAAGATTCGCGAAGCCATCACTCAGAAATTCACCGAGTATCTCCGCCGGGCTGAGGAGATTCGCGCTGTTATTGATGAAGGCGGCGGCTCTGGTCCGGCATCCAATGGTGGTGATGCTGCTGTCGCTGCTCGGCCGAAGGGGAAACCGAAGGATGGGAAGGATGGTGGTGAGGGAGAAGATGCTGAGCAATCGAAGTTGAGAGCTGGATTGAATTCTGCTATTATCAGGGAAAAGCCGAATGTTAAGTGGAATGATGTGGCTGGTTTGGAGAGTGCTAAACAGGCCTTGCAAGAGGCTGTTATCTTGCCTGTGAAGTTTCCTCAGTTCTTCACTGGTAAGAGACGACCATGGAGAGCATTTCTTTTGTATGGACCACCAGGAACAGGAAAGTCATATTTAGCCAAGGCTGTTGCAACAGAAGCAGATTCCACATTCTTCAGTGTATCCTCTTCAGACTTGGTCTCTAAGTGGATGGGTGAAAGTGAAAAATTAGTCTCTAATCTTTTCCAAATGGCTCGTGAAAGTTCCCCTTCAATTATTTTTATTGATGAAATAGATTCATTATGTGGTCAGCGAGGAGAAGGAAATGAAAGTGAAGCTTCTAGACGTATCAAAACAGAGCTCCTAGTGCAGATGCAGGGTGTTGGACACTATGATGAAAAAGTTCTTGTTCTTGCTGCAACAAACACTCCGTATGCTCTAGATCAGGCTATTCGACGAAGTTTTGATAAGCGTATTTATATCCCTCTACCTGATCTGAAAGCTCGGCAGCATATGTTCAAGGTTCATCTTGGGGATACACCACACAACTTGACCGAAAGTGACTTTGAATTCTTAGCTCGTAAAACAGAGGGCTTCTCGGGTTCAGATATATCTGTTTGTGTCAAGGATGTACTTTTTGAACCTGCTCGGAAAACCCAAGATGCCTTGTTCTTCTATAAGACAAAAGATGATGTGTGGGTGCCCTGTGGACCAAGACAGCCAGGTGCTGTGCAAATTACCATGCAGGAGCTTGCAACAAAGGGACTTGCTGCTAAGATTGTTCCACCCCCAATAACAAAAACTGATTTTGAGAAAGTAGTATCAAGGCAGAGGCCAACTGTGAGCAAAGCAGACCTTGGTGTATACGAGAGATACAGGAGTTTGGAGAAAAAGGCTGATGATTATTCAGATGGAAGACTGTCGTGTCAGGTTGCAACCAAACTTTGTAATTTAATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_74837.p1 GENE.R_Transcript_74837~~R_Transcript_74837.p1 ORF type:complete len:456 (+),score=113.24,AAA|PF00004.25|2.2e-42,MIT|PF04212.14|1e-21,MIT|PF04212.14|8.4e+03,Vps4_C|PF09336.6|2.3e-17 R_Transcript_74837:312-1679(+)
MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVIDEGGGSGPASNGGDAAVAARPKGKPKDGKDGGEGEDAEQSKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESSPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHYDEKVLVLAATNTPYALDQAIRRSFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEFLARKTEGFSGSDISVCVKDVLFEPARKTQDALFFYKTKDDVWVPCGPRQPGAVQITMQELATKGLAAKIVPPPITKTDFEKVVSRQRPTVSKADLGVYERYRSLEKKADDYSDGRLSCQVATKLCNLI*

Click here to download the sequence:
Link to NCBI Protein BLAST