Transcript Information: R_Transcript_74838.p1


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeOrtholog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value2.9E-173
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.614913754122
Replicate 26.8544623352176
Replicate 310.075815849854
Condition 2: 8 Hour
Replicate 19.5924007009826
Replicate 29.8357143493875
Replicate 320.64667737233
Condition 3: 24 Hour
Replicate 116.330811326923
Replicate 28.488621978504
Replicate 313.388355444219


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_74838.p1 GENE.R_Transcript_74838~~R_Transcript_74838.p1 ORF type:complete len:291 (+),score=72.15,AAA|PF00004.25|8.5e-32,MIT|PF04212.14|5e-22,MIT|PF04212.14|5.1e+03 R_Transcript_74838:312-1184(+)
ATGTACAGTAATTTCAAAGAACAAGCGATCGAGTACGTAAAACAAGCGGTACAAGAAGACAATGCGGGGAACTACGCAAAAGCTTTCCCTCTTTACATGAACGCCTTGGAGTACTTCAAGACTCATCTTAAGTACGAGAAGAACCCCAAGATTCGCGAAGCCATCACTCAGAAATTCACCGAGTATCTCCGCCGGGCTGAGGAGATTCGCGCTGTTATTGATGAAGGCGGCGGCTCTGGTCCGGCATCCAATGGTGGTGATGCTGCTGTCGCTGCTCGGCCGAAGGGGAAACCGAAGGATGGGAAGGATGGTGGTGAGGGAGAAGATGCTGAGCAATCGAAGTTGAGAGCTGGATTGAATTCTGCTATTATCAGGGAAAAGCCGAATGTTAAGTGGAATGATGTGGCTGGTTTGGAGAGTGCTAAACAGGCCTTGCAAGAGGCTGTTATCTTGCCTGTGAAGTTTCCTCAGTTCTTCACTGGTAAGAGACGACCATGGAGAGCATTTCTTTTGTATGGACCACCAGGAACAGGAAAGTCATATTTAGCCAAGGCTGTTGCAACAGAAGCAGATTCCACATTCTTCAGTGTATCCTCTTCAGACTTGGTCTCTAAGTGGATGGGTGAAAGTGAAAAATTAGTCTCTAATCTTTTCCAAATGGCTCGTGAAAGTTCCCCTTCAATTATTTTTATTGATGAAATAGATTCATTATGTGGTCAGCGAGGAGAAGGAAATGAAAGTGAAGCTTCTAGACGTATCAAAACAGAGCTCCTAGTGCAGATGCAGGTGAGGTTCCTCAGGGCTTTTTTTGAGGGGGCGGGGATGGTTGCCTTTTTGAACCATGGGAAGAGTGCAGGAGCAACGCGTGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_74838.p1 GENE.R_Transcript_74838~~R_Transcript_74838.p1 ORF type:complete len:291 (+),score=72.15,AAA|PF00004.25|8.5e-32,MIT|PF04212.14|5e-22,MIT|PF04212.14|5.1e+03 R_Transcript_74838:312-1184(+)
MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVIDEGGGSGPASNGGDAAVAARPKGKPKDGKDGGEGEDAEQSKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESSPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQVRFLRAFFEGAGMVAFLNHGKSAGATRE*

Click here to download the sequence:
Link to NCBI Protein BLAST