Transcript Information: R_Transcript_7507.p1


Annotated TAIR IDAT3G54630.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20221195-20222901 | Reverse length=568
E-Value3.5E-147
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 140.392241693863
Replicate 225.466716909821
Replicate 332.221344681499
Condition 2: 8 Hour
Replicate 130.340251505313
Replicate 230.790114786554
Replicate 336.905107107768
Condition 3: 24 Hour
Replicate 144.272909226201
Replicate 237.374618469024
Replicate 342.820448436321


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_7507.p1 GENE.R_Transcript_7507~~R_Transcript_7507.p1 ORF type:complete len:573 (+),score=146.66,Ndc80_HEC|PF03801.9|1.3e-28,Ndc80_HEC|PF03801.9|3e+03 R_Transcript_7507:897-2615(+)
ATGAGACCAACACGATCAAGAAAACCAGCAGCACCACTACAACAACAACCGCCAGCAACCCCTTCCTTTACCAACGCCGGCGGCCGCGACTCCGACGTCAGCTTCTGTAGTAGTCGTCCATCATCATCATCAATCGGAGTTTCCAGTCGCACAATCTCAGTCACAGATCCGGCCTTCAAACAATCAGCAATTAGGTCCATCAATTCTTACCTTGCTTTTCATAATGTCCCCATTTCTCTCTCCTTGAAGCCCCTCTCTTCTGCTAAAGACATTACTGATACTTTCCGGTTTCTATTCTCTCGTCTTGAGTTCTCGTTCTCTAACAAGCTTGAAGATGACCTCATGCTTCTCCTCAAGTACCTTAATTGTCCTCACAAGATCAATAAATCGGCTCTTCGAGCTCCTGGTGCTCCGCACTCGTTCCCTCATCTTCTTGCTGTCCTCCATTGGCTTGTCCAGCTCGCTAATTTCGCTGATCACCTTCGCTCTGACGAGAATTCCAGCAGGTATGACTTTATGAAGGATACTCTGACAACCTATGCAGTGGATAGTTACTTGCTATATATGAAAGGGGATGATGAGGGTGTTGAGGTTTTGGATAACGAACTTGCTGAAAAGATGGAGAAAGAAAGGGATTCATTGGTGGATAATTTGAACTCATTAGGTGAGGAAGCAAAGAAGTTAGAAATACAGATTGAAGGATTGAAAACTACGCCTTCGGAGAGGGAGGTGTATGAGAATCAGAGGAAGGATTTGGAAGGAGATTTGGTGAAGTTCCAGGGCTTTACTGCCTCTCTGCGGGATGCAAATTCTATTACCGAGAAGGCGTTGGAGGAGAAGGGGAAGGAGCTGGGTGCTAAAGTGGAGGAGATTAGACGGATACAAGAGGAGAATGAGGAGCTCAAGAAGAAGGTCGAGGCTCAGGGAATTAACTTGAGGGATGCTGAGAGGATGAAGAGGGAGCTGCTGGCTGTGGAGAGGGAGATTACGGAGGCTGAGTCCTGCAGGAGTTCATGGGAGGAGAAATGTTGGGATCTTAATGCTGCCATTGGGCAGAAGTTTAAAGAGCTTGAGGCCTTTTCCATGGAATGCAATCAGGCTCTTCGAAGATTGAAGCTTGGAGGTGGTTTTCAGTATGTCTTGAATGCCAAAGGGTCCACTCCTGCTGAAGTATTGGGGATCAACTATAAAACAACACTCAAACCTGCAATCAATTCTTTTGCTGAAGAGATTAAGAAAAGTGCCACCGCCAAGTTGGAGGAGTTTATTACCCTTCAGCAGCAATCCAAGGAAATTTCTGCCAGGATTGAAACAAAAAGAAGCCGTCTTTCTGCACTTCAATCCCATATTGATGATAGGGAACGACAGTTGAATGTAGTGAGGAAAGACATAGAGGAATATACGTCCTGGTGCGCCAGTGAAGGACGAAGGATTAGAGAAGATGTGGAGGTCAAGGCACACAGCCTTGATATTATGGAAAGAGAAGCACTTGATGCCCTGAAGGCTGCTGAGCTGAAGTTGCAAGAAGAAACGGTGCAAAGCGAGCAAGAAATACAACTATGCGCCTATGAGCTATTTGCATTGATTGATTCGGTCTCCAGATACAAAGAGCACACCGAAACAAAGATTCTGGAGATGCACAAGGATCTGTCTGAAACTTCTGAGTTTATCTCCAATGCTTACAAGAAGACCTTGCCAACACAGCTCATTGGTTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_7507.p1 GENE.R_Transcript_7507~~R_Transcript_7507.p1 ORF type:complete len:573 (+),score=146.66,Ndc80_HEC|PF03801.9|1.3e-28,Ndc80_HEC|PF03801.9|3e+03 R_Transcript_7507:897-2615(+)
MRPTRSRKPAAPLQQQPPATPSFTNAGGRDSDVSFCSSRPSSSSIGVSSRTISVTDPAFKQSAIRSINSYLAFHNVPISLSLKPLSSAKDITDTFRFLFSRLEFSFSNKLEDDLMLLLKYLNCPHKINKSALRAPGAPHSFPHLLAVLHWLVQLANFADHLRSDENSSRYDFMKDTLTTYAVDSYLLYMKGDDEGVEVLDNELAEKMEKERDSLVDNLNSLGEEAKKLEIQIEGLKTTPSEREVYENQRKDLEGDLVKFQGFTASLRDANSITEKALEEKGKELGAKVEEIRRIQEENEELKKKVEAQGINLRDAERMKRELLAVEREITEAESCRSSWEEKCWDLNAAIGQKFKELEAFSMECNQALRRLKLGGGFQYVLNAKGSTPAEVLGINYKTTLKPAINSFAEEIKKSATAKLEEFITLQQQSKEISARIETKRSRLSALQSHIDDRERQLNVVRKDIEEYTSWCASEGRRIREDVEVKAHSLDIMEREALDALKAAELKLQEETVQSEQEIQLCAYELFALIDSVSRYKEHTETKILEMHKDLSETSEFISNAYKKTLPTQLIGF*

Click here to download the sequence:
Link to NCBI Protein BLAST