Transcript Information: R_Transcript_75398.p1


Annotated TAIR IDAT1G55630.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:20791817-20793250 | Reverse length=477
E-Value8.1E-220
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.734503133618
Replicate 23.7508791298109
Replicate 35.174006438556
Condition 2: 8 Hour
Replicate 13.4692498590553
Replicate 25.8771927631863
Replicate 36.299018880586
Condition 3: 24 Hour
Replicate 15.1855416736087
Replicate 24.0306325282574
Replicate 36.4269851544688


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_75398.p1 GENE.R_Transcript_75398~~R_Transcript_75398.p1 ORF type:complete len:487 (+),score=81.71,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|0.00052,PPR_2|PF13041.2|9.9e-10,PPR_2|PF13041.2|3.4e-09,PPR_2|PF13041.2|2.2e-11,PPR_2|PF13041.2|1.6e-15,PPR_2|PF13041.2|3.6e-15,PPR_2|PF13041.2|0.013,PPR|PF01535.16|7e+03,PPR|PF01535.16|2.7e+02,PPR|PF01535.16|1.2e+02,PPR|PF01535.16|0.03,PPR|PF01535.16|0.0014,PPR|PF01535.16|1e-05,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|1.2e-09,PPR|PF01535.16|0.00054,PPR_1|PF12854.3|63,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.032,PPR_1|PF12854.3|0.0002,PPR_1|PF12854.3|1.6e-07,PPR_1|PF12854.3|4.8e-10,PPR_1|PF12854.3|4.4e-06,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|3.3e+02,PPR_3|PF13812.2|4.5e+02,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|5,PPR_3|PF13812.2|0.0051,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|8.5e-06,PPR_3|PF13812.2|0.033 R_Transcript_75398:597-2057(+)
ATGAACTCTATAACTCCATTTGGTCTAAGGGTTTTAAAGCCCTTCTCATTTTGGGGTCTTGTTTCAAGAGCTTTTTGTACTCGTAGTGATAAAACTAAAACTAGTGATGGGTTTTCTCATATTGAGAAATTAATTAGAGAAAGCTGGGAAAGTTCTGATTTTGATTCGGGTAAACATAGAGTTGTTAGTGATGATGATGATGAATATGAAATTGGAAGTAATATCTCTCTAAAGCAGTACTTTTTTGAGATTACTTGGAGAGATACTGATAGGGTTTTCGATGTATTAAGGCAGGATGGTCCTGGTTTTAATGTTAAATCCGCTTTAGATGGATTGAATGTAAGGGTTTCGGGCCTTCTTGTGAGAGAAGTCCTCTTGAAGATTTTGAGGATTATAAATTATGAGAATAAGACTTTGTGTGCCAAATTGGCTTACAAGTTTTTTGTATGGTCGAGTGAGCAGGAAAACTATAGACATACTGTGAATGTATACCATTTGGTCATGAAAATCTTTGCAGCTGCCGAGGAGTTTAAGGGAATGTGGCGATTAGTTGATGAAAAGACGGAGCTAGGGTATCCGGTGACTGCCGGTACGTTTAATATCTTGATTTGTACTTGTGGTGAGGCTGGCTTACAAAGGAAAGTTGTGGAGAAGTTCATTAAATCAAAGACATTCAATTACAGGCCGTTCAAGCATTCCTACAACGCGATTCTGCTTGGTCTTCTAAATATAAGCCAGTATAAGTTGATTGAGTGGGTTTATCAGCAAATGCTTGCTGATGATCATTCACCCGACATTCTAACTTATAATTTACTTATGTATGCAAAATATAGGCTTGGAAAATTGGATCATTTCCATCGGTTGCTTGATGAAATGGGCAGGAATGGATTTTCCCCGGATTTCCATACTTTTAATATTCTTCTTCATGTCCTTGGTAAAGGGGATAAGCCTCTTGCTGCACTGAATCTTTTGAATCACATGAAGGAAGAGGGATTAAATCCAAGTTCCCTTCACTACACTACATTGATTGATGGTCTGAGCCGGGCTGGGAATTTAGAGGCTTGCAAGTATTTTTTTGATGACATGGTCAAGAACAGCTGCCGGCCTGATGTGGTCTGTTACACTGTTTTGGTGACTGGATATATTGAGGCAGGGGAGCTTGAGAAGGCTCAGCAGATGTTTGATGACATGATTGCAGCTGGACATTTGCCGAATGTGTTTACATACAACTCCATGATTTGGGGACTTTGTGTAGCAGGTAAATTTGAGGAGGCGTGCTCTATGCTTAAGGAAATGGAAAACAGAGGTTGTACCCCAAATTTTCTTGTGTATAGTACCTTGATTAATAATCTGCGAAATGCTGGGAAACTTTCTGATGCTCATGAAGTAGTGAGAGAAATGATTGAGAAAGGACAGTATCTCCACCTTATCTCAAAATTTAAGAGATACAGGAGATGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_75398.p1 GENE.R_Transcript_75398~~R_Transcript_75398.p1 ORF type:complete len:487 (+),score=81.71,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|0.00052,PPR_2|PF13041.2|9.9e-10,PPR_2|PF13041.2|3.4e-09,PPR_2|PF13041.2|2.2e-11,PPR_2|PF13041.2|1.6e-15,PPR_2|PF13041.2|3.6e-15,PPR_2|PF13041.2|0.013,PPR|PF01535.16|7e+03,PPR|PF01535.16|2.7e+02,PPR|PF01535.16|1.2e+02,PPR|PF01535.16|0.03,PPR|PF01535.16|0.0014,PPR|PF01535.16|1e-05,PPR|PF01535.16|3.1e-05,PPR|PF01535.16|1.2e-09,PPR|PF01535.16|0.00054,PPR_1|PF12854.3|63,PPR_1|PF12854.3|16,PPR_1|PF12854.3|0.032,PPR_1|PF12854.3|0.0002,PPR_1|PF12854.3|1.6e-07,PPR_1|PF12854.3|4.8e-10,PPR_1|PF12854.3|4.4e-06,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|3.3e+02,PPR_3|PF13812.2|4.5e+02,PPR_3|PF13812.2|4.5,PPR_3|PF13812.2|5,PPR_3|PF13812.2|0.0051,PPR_3|PF13812.2|0.0018,PPR_3|PF13812.2|0.0012,PPR_3|PF13812.2|8.5e-06,PPR_3|PF13812.2|0.033 R_Transcript_75398:597-2057(+)
MNSITPFGLRVLKPFSFWGLVSRAFCTRSDKTKTSDGFSHIEKLIRESWESSDFDSGKHRVVSDDDDEYEIGSNISLKQYFFEITWRDTDRVFDVLRQDGPGFNVKSALDGLNVRVSGLLVREVLLKILRIINYENKTLCAKLAYKFFVWSSEQENYRHTVNVYHLVMKIFAAAEEFKGMWRLVDEKTELGYPVTAGTFNILICTCGEAGLQRKVVEKFIKSKTFNYRPFKHSYNAILLGLLNISQYKLIEWVYQQMLADDHSPDILTYNLLMYAKYRLGKLDHFHRLLDEMGRNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMKEEGLNPSSLHYTTLIDGLSRAGNLEACKYFFDDMVKNSCRPDVVCYTVLVTGYIEAGELEKAQQMFDDMIAAGHLPNVFTYNSMIWGLCVAGKFEEACSMLKEMENRGCTPNFLVYSTLINNLRNAGKLSDAHEVVREMIEKGQYLHLISKFKRYRRC*

Click here to download the sequence:
Link to NCBI Protein BLAST