Transcript Information: R_Transcript_75442.p1


Annotated TAIR IDAT3G23780.1
Annotated Gene Namenuclear RNA polymerase D2A
Annotated Gene Symbol(s)NRPD2A, DRD2, NRPD2, DMS2, NRPE2
Annotation TypeOrtholog
Chromosome Positionchr3:8567971-8573819 | Reverse length=1172
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.285916665727
Replicate 28.9512373463522
Replicate 311.642994109303
Condition 2: 8 Hour
Replicate 113.945591956709
Replicate 214.790020356877
Replicate 318.677526491011
Condition 3: 24 Hour
Replicate 119.593956334241
Replicate 213.182033873342
Replicate 322.576225198571


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_75442.p1 GENE.R_Transcript_75442~~R_Transcript_75442.p1 ORF type:complete len:1208 (+),score=281.47,RNA_pol_Rpb2_6|PF00562.24|3e-97,RNA_pol_Rpb2_7|PF04560.16|4.8e+03,RNA_pol_Rpb2_7|PF04560.16|1.6e+04,RNA_pol_Rpb2_7|PF04560.16|1.5e+04,RNA_pol_Rpb2_7|PF04560.16|1.1e-31,RNA_pol_Rpb2_1|PF04563.11|1.5e-31,RNA_pol_Rpb2_4|PF04566.9|1.2e+04,RNA_pol_Rpb2_4|PF04566.9|4.1e+03,RNA_pol_Rpb2_4|PF04566.9|7e-18,RNA_pol_Rpb2_3|PF04565.12|7.9e-17,RNA_pol_Rpb2_2|PF04561.10|3.6e-14,RNA_pol_Rpb2_5|PF04567.13|1.3e-08 R_Transcript_75442:264-3887(+)
ATGGGTGTTGATGAAAAGCATGGTTTGGGCACCAGTAGCAACGGGAAAGCAGCACTGGATGATGCTGACACAGAGATATTATGGGATAGCGAAGATATGGAGTCTGATGACGATGCTGATGTCATGGACTTGGACCTCGAAGACGTTGGTGAGGCGTCTCTGATGAACTTTTGCAAGAAAGCCTCTTCAGCCTTCTTCAAGCAATATGGCCTTATTAGCCACCAGATCAACTCGTACAACACCTTTGTGAACTATGGGATTCAGAAGGTGTTTGACAACATCGGTGAGATCAGAATTGAGCCTGGTTTTGATCCTTCGAAGAAGGGGGATGGCGAATGGAAGTATGCTACTGTTCGGTTTGGAAAGGTTGAGCTCGAGCAACCTATGTTTTGGACTGGGGAGAAGTTCCATGCTGATGGTGGTGAAGACTTCATCAAATTACTACCGCGGCATGCTAGGCTGCAGAACATGACGTATTCTGCGAGATTGAAAGTTGAGACGAAGCTTGAGGTATATACTTTAGAGAAGGTCCGCAGTGACAAGTTCAAAACTGGAAAATCAGAGTACGTGGATAAAAAGATCTTCAAAGAAGACAAAAGTGATGTCATTATAGGAAGGATCCCTGTTATGGTGAAATCTGATATTTGCTGGATGAGTGAAGCGGAAAAAGGTGATTGTGAATTTGATCAAGGAGGTTATTTTATTGTCAAGGGTGCTGAGAAGACATTTATTGCACAAGAACAGATCTGCTTGAAGAGGCTCTGGATTTCGAATGATCCATACTGGAAGGTTGCTTACAGGTCCGAGGTTAAGAGGAGAAGAGTGCATGTTAAGCTAGTGGAAAATCCAAAGGCTGAAAATATCCGAGGAGGAGAGAAAATGATTAGTGTGTATTTCTTATTGGTGGAAGTTCCGATCTGGATATTGTTTTTTGCACTGGGTGTGAAATCCGACAAGGAGGTTGTCGATTTGATAGATTACAACACTGATGATGGGCGCATCACAAACATTCTGTTTGCATCCATTCATGATGCCGATGAGAAGTGTGAAGGCTTCCGTTTTCAAGGTAGAGCTTTCGAATACATTGACAAAGCCATCAGGTCGTGCAAGTTTCCTCCAGTGGAGTCAACCCAGGAATTCCTCGACAACAACCTTTTCCCTAGTCTATCAGGGAACAAGCGCAAAGCACGCTTTCTGGCCTATATGGTCAAGTGTCTCTTGCAAGGATTTACTGGTAGGAGAAAGTGTGATAATAGGGATGATTTTAGGAACAAAAGGCTGGAGTTGGCTGCTGAGCTTCTAGAGCGAGAGCTGAGGGTTCACATGAGGCATGCTGAGAAGCGAATGGTGAAGGCGATGCAGCGGGATCTGTATGCAGATCGTGAGCTGTACTCCATCGAGCATTACTTGGATGCATCAATTGTCACCAATGGCCTCACTCGAGCATTCTCCACTGGTGCATGGGCCCATGCTTATAAGAAGTCTGATAGGATCTCAGGTGTGGTGGCAAATCTTAGGCGTACCAATCCATTGCAAAGTACCTGTGATATGAGGAAAACCCGTCAACAGGTTTCATACACAGGGAAGGTCGGAGATGCTAGATACCCGCACCCATCTCACTGGGGAAAAGTTTGCTTTTTGTCCACACCTGATGGTGAGAACTGCGGTCTTGTGAAGAATCTAGCTGCTACTGGACTCGTCAGCACTAAAGTTATGGAACCACTATTTGACAAACTGATGAGCTGTGAAATGGAGAAATTAGTCGATGATACTAGTACTTCGCTGCATGGGAAACACAAAGTTCTTTTAGATGGTGAGTGGGTTGGAGTATGTGCTGATTCCCGCTCCTTTGTTCAAGAGTTTCAAAGAAAGCGTCGAAGGAAGTATTTTCCTAGTCAGGTTGAAATCAAGCATGATATACAGAATGAAGAAGTTCGGGTATTCTCTGATGCTGGAAGAATTATAAGGCCTCTTCTAGTGGTTGAGAATTTGAGAAAGATCAAGACATTGAAAGGGGATGATTATTCCTTCCAAACACTTCTGGATAAGGGAATAATTGAACTGGTTGGGACTGAAGAGGAAGAAGACTGCCACACTGCATGGGGAGTGAAGTACCTCTTCATGGGAGAGAAGGGCAAAGAAGCTGTCAAGTACACTCACTGTGAGCTTGACATGTCATTTCTTCTAGGTGTAAGTTGTGGAATCATCCCGTTTGCCAATCATGATCATGCTAGAAGGGTCCTCTACCAGTCGGAGAAGCATTCTGGACAAGCTATTGGATATTCGACCACAAACCCCAACATCAGAATCGATACCTTGTCTCACCAGATGTACTATCCTCAAAGACCGCTTTTTCGGTCTGTGATTTCTGATTGTCTTGGGAAACCTGGAAATCTTGTAGGGCGCAATCAAGTTCTCCCAAAGGCAGAGTTCTTCAATGGGCAAACTGCTATTGTGGCTGTAAATGTGCACCTTGGATACAATCAGGAAGATTCCTTGGTCATGAACCGAGCTTCGTTGGAGCGTGGCATGTTTCGGACAGAGCACATTAGGAGTTACAAGGGTGAGGTTGACAACAAGGAATCATTGGAAAAGAGGCGTAAATTTGAGGATAGTATTAGTTTCGGGAAAATACAGAGTAAGTTAGGGCGTGTTGACAGTCTTGATGATGATGGATTCCCGTATATTGGAGCAAACCTGCAAAGTGGTGATATCATCATTGGTAGATGTGCTGAGTCTGGGGCTGACCATAGTGTGAAGCTGAAGCACACAGAAAGAGGAATGGTGCAGAAAGTGGTCTTATCAGCAAATGATGATGGGAAGAATTATGCTGTTGTATCACTTAGACAGGTTCGCTCGCCATGTCTTGGTGACAAGTTTTCTAGCATGCATGGGCAGAAGGGTGTTCTTGGATTTCTGGAGTCACAGGAGAATTTCCCTTTCACAAAGCAAGGCATAGTTCCTGATATTGTAATCAACCCTCATGCATTCCCCTCAAGACAAACTCCAGGCCAACTACTGGAGGCGGCTCTGGGCAAGGGTATTGCATGTGGTGGTTCGTTGAGATATGCTACCCCCTTCTCTACTCTCTCTGTTGAAGCCATAACCGAGCAGCTTCATAGGGCTGGTTTCTCCAAATGGGGAAACGAAAGGGTCTACAATGGTAGAACAGGAGAGATGATACGCACTCTCATATTCATGGGCCCTACCTTTTACCAGCGACTAGTGCATATGGCCGAGGACAAAGTGAAGTTCCGCAACACTGGCCCAGTCCATCCTCTGACTCGACAGCCTGTAGCAGACAGGAAGCGTTTTGGGGGTATCAAGTTCGGGGAAATGGAGCGTGACTGCCTGATTGCCCATGGTGCTTCAGCTAATCTACATGAGCGGCTCTTCACACTCAGTGACCAATCGCAGATGCATATTTGTCGGAGATGCAAGAATATTGCAAATGTCATCCAAAGGGCTGTTCCTGGTGGCAAAAAGATTCGAGGGCCTTACTGCCGGTTCTGTGAATCTGTTGATGACATTGTGAAGGTGAGTGTGCCCTATGGAGCAAAGCTTTTGTGCCAAGAACTGTTCAGCATGGGTATATCTCTTAGGTTTGAGACCCAGCTGTGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_75442.p1 GENE.R_Transcript_75442~~R_Transcript_75442.p1 ORF type:complete len:1208 (+),score=281.47,RNA_pol_Rpb2_6|PF00562.24|3e-97,RNA_pol_Rpb2_7|PF04560.16|4.8e+03,RNA_pol_Rpb2_7|PF04560.16|1.6e+04,RNA_pol_Rpb2_7|PF04560.16|1.5e+04,RNA_pol_Rpb2_7|PF04560.16|1.1e-31,RNA_pol_Rpb2_1|PF04563.11|1.5e-31,RNA_pol_Rpb2_4|PF04566.9|1.2e+04,RNA_pol_Rpb2_4|PF04566.9|4.1e+03,RNA_pol_Rpb2_4|PF04566.9|7e-18,RNA_pol_Rpb2_3|PF04565.12|7.9e-17,RNA_pol_Rpb2_2|PF04561.10|3.6e-14,RNA_pol_Rpb2_5|PF04567.13|1.3e-08 R_Transcript_75442:264-3887(+)
MGVDEKHGLGTSSNGKAALDDADTEILWDSEDMESDDDADVMDLDLEDVGEASLMNFCKKASSAFFKQYGLISHQINSYNTFVNYGIQKVFDNIGEIRIEPGFDPSKKGDGEWKYATVRFGKVELEQPMFWTGEKFHADGGEDFIKLLPRHARLQNMTYSARLKVETKLEVYTLEKVRSDKFKTGKSEYVDKKIFKEDKSDVIIGRIPVMVKSDICWMSEAEKGDCEFDQGGYFIVKGAEKTFIAQEQICLKRLWISNDPYWKVAYRSEVKRRRVHVKLVENPKAENIRGGEKMISVYFLLVEVPIWILFFALGVKSDKEVVDLIDYNTDDGRITNILFASIHDADEKCEGFRFQGRAFEYIDKAIRSCKFPPVESTQEFLDNNLFPSLSGNKRKARFLAYMVKCLLQGFTGRRKCDNRDDFRNKRLELAAELLERELRVHMRHAEKRMVKAMQRDLYADRELYSIEHYLDASIVTNGLTRAFSTGAWAHAYKKSDRISGVVANLRRTNPLQSTCDMRKTRQQVSYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAATGLVSTKVMEPLFDKLMSCEMEKLVDDTSTSLHGKHKVLLDGEWVGVCADSRSFVQEFQRKRRRKYFPSQVEIKHDIQNEEVRVFSDAGRIIRPLLVVENLRKIKTLKGDDYSFQTLLDKGIIELVGTEEEEDCHTAWGVKYLFMGEKGKEAVKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYSTTNPNIRIDTLSHQMYYPQRPLFRSVISDCLGKPGNLVGRNQVLPKAEFFNGQTAIVAVNVHLGYNQEDSLVMNRASLERGMFRTEHIRSYKGEVDNKESLEKRRKFEDSISFGKIQSKLGRVDSLDDDGFPYIGANLQSGDIIIGRCAESGADHSVKLKHTERGMVQKVVLSANDDGKNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGSLRYATPFSTLSVEAITEQLHRAGFSKWGNERVYNGRTGEMIRTLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDQSQMHICRRCKNIANVIQRAVPGGKKIRGPYCRFCESVDDIVKVSVPYGAKLLCQELFSMGISLRFETQLC*

Click here to download the sequence:
Link to NCBI Protein BLAST