Transcript Information: R_Transcript_75476.p1


Annotated TAIR IDAT2G40030.1
Annotated Gene Namenuclear RNA polymerase D1B
Annotated Gene Symbol(s)NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1
Annotation TypeOrtholog
Chromosome Positionchr2:16715089-16723406 | Forward length=1976
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.4851069535645
Replicate 21.6569050202255
Replicate 33.2682592782389
Condition 2: 8 Hour
Replicate 13.9573115066255
Replicate 23.4162458368478
Replicate 35.5807035177579
Condition 3: 24 Hour
Replicate 17.5511474530517
Replicate 24.3024463366088
Replicate 36.8399077146554


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_75476.p1 GENE.R_Transcript_75476~~R_Transcript_75476.p1 ORF type:3prime_partial len:1584 (+),score=359.74,RNA_pol_Rpb1_2|PF00623.16|1.1e-33,RNA_pol_Rpb1_1|PF04997.8|4.1e-13,RNA_pol_Rpb1_1|PF04997.8|4.4e+03,RNA_pol_Rpb1_5|PF04998.13|1.1e-06,RNA_pol_Rpb1_5|PF04998.13|0.083,RNA_pol_Rpb1_3|PF04983.14|2e-09 R_Transcript_75476:507-5255(+)
ATGGAGGAAAGTGTGGCTTCAAATGTTGCTGATGGGGAGATAATAGGCATACAATTCGGTTTGGCAACCCACCTTGAAATTTGTAAATCTTCCATCAATGACTGCCCTATTAGCCATGCCAGTCAGCTTGCAAATCCTTTCCTTGGGTTGCCCTTGGAAACTGGCAAATGTGAATCCTGTGGTACGGCTGAACTTGGAAAATGTGAAGGACATTTTGGATATATTGAATTACCCATTCCAGTCTATCACCCTTCTCACATCAGTGAATTGAGACGGATGCTTAGCATACTGTGTCTGAAGTGTCTGAAGTTGAAGACGAGCAAGCCGTCAAAGAACAATGGTGTGATGGAGAGACTGTTATCAGCATGTTGTGAAGAAACATGTCATGTCTCAATAAAAGAAAGCAAGAATAATGATGGAGCATCTTTTCTTGAGCTTAGATTACCTGCCAGATACAGAACACATGATGGTGTTTGGAACTTTCTTGAGAGATATGGTTACAGATACGGGGATGGTTCTTCTAGGATATTGCTTCCTTCAGAGGTATCGGTGATTTTGAAAAAGTTGCCTGATGAGACAAGAAGAAAGCTAGCTAGGAAAGGGTACTTTCCTCAAGATGGATATATCTTGCGATATTTACCTGTTCCCCCTAATTGTTTATCTGTGCCAGATATATCAGATGGTGTCAGTGTAATGTCTTCGGATCTTTCTACTGCAATGTTGAAGAAGGTTCTGAGGCAAATTGAGGTTATCAGAAGCTCTCGGTCTGGAGACCCAAACTTTGAATCACATGAAGTTGAAGCTAATGAGCTTCAGGTGGTCGTTTCTGACTATCTCCAAGTCAGAGGCACAAGCAAGGCTGCACGAGATGCAGACAATCGGTATGGAGTTACAAAAGAGGGCAATAATTCTTCAACCAAAGCGTGGCTTGAGAAGATGAGAACACTATTCATAAGTAAAGGTTCTGGTTTCTCATCACGTAGTGTCATCACTGGTGATGCTTATAAACCTGTGAATGAAATTGGCCTGCCTTCTGAGATTGCTAAAAAGATGACATTTGAGGAGAGAGTGAATGTGCACAACATTCAATATTTACAGAGCCTTGTAGATAGGAATTTGTGCTTGACGTTCAGGGATGGATCGTCCACATATTCACTTAGGGAGGGTTCAAAGGGACATACATTTCTTAGGCTTGGACAAATTGTTCATAGGAGGATCATGGATGGGGACATCGTCTTTATTAACCGACCTCCTACCACTCACAAACATTCTTTGCAAGCCTTGCATGTGTACATTCATGATGATCACACGGTCAAAATCAACCCTCTCATGTGTGGTCCTTTGGCTGCGGATTTTGATGGGGACTGTGTTCACTTGTTCTACCCCCAGTCACTTTCTGCAAGAGCTGAAGTTTTGGAGCTGTTCTCAGTTGACAAACAGTTGTTAAGCTCTCACAGTGGGAACCTTAACTTGCAGCTTACAACTGATTCTCTGTTGTCTCTGAAAACCATGTTTCAATTATATTTTCTAAACAAGGCTTCTGCTCAACAATTAGCTATGTATGCCTCTACTCCTTTGCCATCTCCTGCATTACTCAAAGCGTGTTCTTTTGGTCCACGTTGGACTGCTCTTCAAGTGCTGCAGACTGCTTTGCCACCTCAGTTTGAGTGCCGTGGGGATAGACTTTTAATTCATGGAAGCGAGGTGGTTAAACTAGATTTCAATCGGGATGTCATGGCATCAGTGATCAATGAGATCCTCACTTCTTTGTTTTTCAACAAAAGCCCCAAAGAGGCTCTGAATTTCTTTGACGCTCTTCAGCCACTTCTGATGGAAAACTTATTTGCTGAGGGTTTTAGTGTGGGATTGCATGACTTTTATATTCCCATATCAGAGTTACAAACTCTTCAGAGCCAGATTCAAGACATTTCACCTCTGTTACTTCAGTTGCGTTCGTCTTTTAATGAACTGGTCCAGCTGCAGTTTGAAAGTTATATACACCATCTTAAAGTGTCAGTAGCAAATTTCATTCTGAAGTCTTCAGCACTTGGAAACCTGATTGATTCTAGGAGTGAGTCTGCTATTGACAAGGTAGTGCAGCAGATAGGATTTTTGGGTTTGCAGTTGTCAGATAAGCGAAAATTCTATTCAAGAAGTTTGGTTGAGGAAGTGGCATGTCTTTTTCATGAGAAGTATCCATACACGGATCTGTACCCATCTGGGGCATTTGGATTAGTGAAGAGTTGCTTTTTCCGAGGATTGGACCCATATGAGGAGATTGTGCACTCGATTGCTACTAGGGAAGTCATTGTCCGCTCTTCAAAAGGATTGGCTGAGCCGGGAACACTTTTCAAGAACTTGATGGCAATTCTTAGAGATGTCGTCATATGCTATGATGGCTCAGTAAGAAATCTCAGTAGCAATTCAATTATTCAGTTTGAGTATGGATTGGGAGGGGTACCATCCCAGAGTTTATTTCCTGCAGGGGAGCCTGTTGGTGTTTTGGCTGCTACAGCCATGTCTAATCCGGCTTATAAAGCTGTTCTTGACTCTTCTCCTAGTAGCAATTCATCATGGGACATGATGAAGGAGATACTTTTTTGTCGTGTTAATTTCAAGAATGATTTGAATGACCGGCGTGTGATTCTTTATTTAAATGATTGTGATTGTGGAAGAAGGTATTGTCAAGAAAATGCTTCGTATGTAGTGAAGAATCATCTGAAGAAGGTTAGCTTGAGAGATGCTGCTGCAGAGTTCTTGATTGAGTATAAACATTCAAAAGCTGAACCTGGAAGTTCTGAGCTAGACACGGGACTTGTTGGTCATATTCATCTCAACAAGACGCGAGTGAATGAAGCAAACATTAGTATGCTTGAAATCCTTCAGAAATGTCAAGATGAAGTCAATATGCTGCGCAGGAAGAAGAAGTATGGTTTTTATTTTAAGAGGATTCTTCTGTCCGTCAGTGAGTGTTGCTACTTCCAGCATTCCAGCAGCAAGTGGTCTAATATGCCATGTCTGAAGTTCTCTTTGCAAGATTTGACTGATATTCATTTGGAGAGAACTTCACATATCATGGCCGATCTTATCTGCCCAATTCTTTTGGATACGATTATTAAAGGTGATCCTCGGATTTCCACTGTCAACATCATCTGGGTTAATCCAGATACAACAATGTGGGTTCAAAGTCCTTGCAGCGATAGAAAAGGTGAGCTTGCAGTGGAAGTAACTTTGGAGAAAACAGCAGTTCGTCAAAATGGTGATGCATGGAGAATTGTTCTGGATTGTTGTCTTCCTGTATTTCATTTGATTGACACTAGGCGTTCTATCCCATATGCCATAAAACAAATTCAGGACCTGTTTGGGATATCGTGTGCTTTTGATCAAGCGGTTCAGCGACTGTCGACATCTGTGACAATGGTCACAAAAGGTGTGCTGAAGGAGCATTTGATTCTTTTGGCAAGTAGCATGACATGCGCAGGGAATTTGGTTGGGTTCAACATGAGTGGAATCAAAGCAATATGCCGGGCATTGAGTGTCCAAGTGCCTTTCACCGAAGCAACACTCTATACACCTCGGAAATGCTTTGAAAGGGCTTCTGAGAAGTGTCATGTGGACTCTCTAGCCAGCATTGTGGCATCATGTTCGTGGGGAAAACGTGTTTCTGTTGGTACAGGAGCAAAGTTCGATGTCCTGTGGGACACGAAAGAGACTGGAATTGGTGATCAACAAGTTGATGTTTACAACTTCCTCCATCTGGTGCGTGGTTCAAATGAGGATGAGGTTGACACTGGTTGCTTAGGTGAAGATACTGAGAGGTTTGAATGGGAAGATACATCTATGGAACCAGCACTCTCTCCTGATCAGGAAAATAAGGCTGTATTTGAAGACACAGTTGAAATTGGTTTAGATTCTCATGCATCGGGAGAGGGTGATTCGGGTTGGGATGCGAAAGGATGGGGTGGTAAGAATAATAGTGAGAACTTTGGTAGTGGTTCAGGTACAACTGAAAGCAATGGTTGGTCAAGCTGGGGGACGAAGAAAGATCCTTCTCAGCCACAAGAGTCTTCAGGTGCTGGTGGTTGGGAGACATCTAAGGTGGGTTCCCAGCAGGAAGAGAACGGTATACAATCTACTTGGGGGCAAGCGATCAACTCAAAGTGGAAGAATAGCAGTGAAACTACTGATGGATGGAACTCAGATAAGGCAAATGAAGAGGCTGTTTCAAATAGCTGGGATTCTAGGAAGGCAGATGGTAAAACTCACTCCTCATGGGGACAGCCAAGTGAGACAGCCTTGAAGGACTCTGTCCAGAATGCTGGTGGGTGGACTACGGAAAAGACTGCTGATGAGACTGGTTCAAAGAGCTGGCAGCACGGAAGAGAAGGCGGTAAAAGTCAGTCCTCATGGGGACAATCGAGTGAGGCGCCTTGGAAAAAATCCAATCAGAATGCTGGTGGCTGGGGTTCAGAAAAGTGTGGTACAGATGTTGCTTCGAAGAGCTGGGAGCCCAGAAAAGAAGGGGGTAAAACTCAGTCGTCATGGGGCCTATCAAGCGAGACAGCCTCAAAGGACTCCACCCCAAATGTTGGTGGCTGGAGCACAAAAGTGCCTGGCGAAGAGACTGGTTCAAAGAGCTGGGAGCTTGGAAGGGATGGGGGTAAAACTCAGTCCTCGTGGGGACAGCCTAGTGAGAAGGCTTGGAAGAACTCCAATCAAAATGCTGGTGGCTGGGGCACTGAAAACCAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_75476.p1 GENE.R_Transcript_75476~~R_Transcript_75476.p1 ORF type:3prime_partial len:1584 (+),score=359.74,RNA_pol_Rpb1_2|PF00623.16|1.1e-33,RNA_pol_Rpb1_1|PF04997.8|4.1e-13,RNA_pol_Rpb1_1|PF04997.8|4.4e+03,RNA_pol_Rpb1_5|PF04998.13|1.1e-06,RNA_pol_Rpb1_5|PF04998.13|0.083,RNA_pol_Rpb1_3|PF04983.14|2e-09 R_Transcript_75476:507-5255(+)
MEESVASNVADGEIIGIQFGLATHLEICKSSINDCPISHASQLANPFLGLPLETGKCESCGTAELGKCEGHFGYIELPIPVYHPSHISELRRMLSILCLKCLKLKTSKPSKNNGVMERLLSACCEETCHVSIKESKNNDGASFLELRLPARYRTHDGVWNFLERYGYRYGDGSSRILLPSEVSVILKKLPDETRRKLARKGYFPQDGYILRYLPVPPNCLSVPDISDGVSVMSSDLSTAMLKKVLRQIEVIRSSRSGDPNFESHEVEANELQVVVSDYLQVRGTSKAARDADNRYGVTKEGNNSSTKAWLEKMRTLFISKGSGFSSRSVITGDAYKPVNEIGLPSEIAKKMTFEERVNVHNIQYLQSLVDRNLCLTFRDGSSTYSLREGSKGHTFLRLGQIVHRRIMDGDIVFINRPPTTHKHSLQALHVYIHDDHTVKINPLMCGPLAADFDGDCVHLFYPQSLSARAEVLELFSVDKQLLSSHSGNLNLQLTTDSLLSLKTMFQLYFLNKASAQQLAMYASTPLPSPALLKACSFGPRWTALQVLQTALPPQFECRGDRLLIHGSEVVKLDFNRDVMASVINEILTSLFFNKSPKEALNFFDALQPLLMENLFAEGFSVGLHDFYIPISELQTLQSQIQDISPLLLQLRSSFNELVQLQFESYIHHLKVSVANFILKSSALGNLIDSRSESAIDKVVQQIGFLGLQLSDKRKFYSRSLVEEVACLFHEKYPYTDLYPSGAFGLVKSCFFRGLDPYEEIVHSIATREVIVRSSKGLAEPGTLFKNLMAILRDVVICYDGSVRNLSSNSIIQFEYGLGGVPSQSLFPAGEPVGVLAATAMSNPAYKAVLDSSPSSNSSWDMMKEILFCRVNFKNDLNDRRVILYLNDCDCGRRYCQENASYVVKNHLKKVSLRDAAAEFLIEYKHSKAEPGSSELDTGLVGHIHLNKTRVNEANISMLEILQKCQDEVNMLRRKKKYGFYFKRILLSVSECCYFQHSSSKWSNMPCLKFSLQDLTDIHLERTSHIMADLICPILLDTIIKGDPRISTVNIIWVNPDTTMWVQSPCSDRKGELAVEVTLEKTAVRQNGDAWRIVLDCCLPVFHLIDTRRSIPYAIKQIQDLFGISCAFDQAVQRLSTSVTMVTKGVLKEHLILLASSMTCAGNLVGFNMSGIKAICRALSVQVPFTEATLYTPRKCFERASEKCHVDSLASIVASCSWGKRVSVGTGAKFDVLWDTKETGIGDQQVDVYNFLHLVRGSNEDEVDTGCLGEDTERFEWEDTSMEPALSPDQENKAVFEDTVEIGLDSHASGEGDSGWDAKGWGGKNNSENFGSGSGTTESNGWSSWGTKKDPSQPQESSGAGGWETSKVGSQQEENGIQSTWGQAINSKWKNSSETTDGWNSDKANEEAVSNSWDSRKADGKTHSSWGQPSETALKDSVQNAGGWTTEKTADETGSKSWQHGREGGKSQSSWGQSSEAPWKKSNQNAGGWGSEKCGTDVASKSWEPRKEGGKTQSSWGLSSETASKDSTPNVGGWSTKVPGEETGSKSWELGRDGGKTQSSWGQPSEKAWKNSNQNAGGWGTENH

Click here to download the sequence:
Link to NCBI Protein BLAST