Transcript Information: R_Transcript_75969.p1


Annotated TAIR IDAT5G54090.1
Annotated Gene NameDNA mismatch repair protein MutS, type 2
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21948283-21952550 | Reverse length=796
E-Value3.9E-185
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1428939392231
Replicate 21.5990559919697
Replicate 32.2375786724718
Condition 2: 8 Hour
Replicate 12.4323706901237
Replicate 22.5914929286142
Replicate 33.3358092365281
Condition 3: 24 Hour
Replicate 12.8127114815399
Replicate 21.5701591594285
Replicate 32.0655615350218


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_75969.p1 GENE.R_Transcript_75969~~R_Transcript_75969.p1 ORF type:3prime_partial len:604 (+),score=149.48,MutS_V|PF00488.17|8.5e-40 R_Transcript_75969:884-2692(+)
ATGAGCACTCTAATTGCAAATGAAACCAATGAACTGCCTTCCTTGGAAGCCCGTAATATTGATGGGAGATGGTGCATCAGATCAGGAACAGATCAACTTACTAGCTTCCAGGGGCTGCTGCTTTCCAGTGGATCTGGCATGGGAAACATAATAGAACCAATTTCAGCTGTTCCGTTAAATGATGAACTACTGGAAGCTAGGTCATCTGTAGAAGATGCTGAGGCTGAAGTTCTTTTGGATATAACAGAAAAGATGAAAATGGACCTTGCTAGCATAGAATTACTGTTGAAGAATATAGTTGAACTTGACGTTGTAAATGCCAGAGCAAGCTATGGTCTCTCAATGAGAGGAAACTGTCCTGATTTACTTCTGTTTGACAAGAAGAATATTCCCTTACACTCAGAAGGCTTCTCACCTGAGGTTAAACTCGCCAATTTTACCAAGAAGCGATGGATGTTGTGTTTGCCCAAGGCATACCATCCTCTGTTACTTCAGCAGTACCGGCATAATCTCCGGGAAGCCAAGAAGGATGTTGCTGTTGCCACTGCAGAACTCAGACGAAGAAAGCTGTATGGAGAAAACGTCAACCAGCAAGAAGCCAAACAAATAGATCTTCAGATGCTAGAAGAGAAGGTTGCCCAACTGGAAAATACACACCCGGTTCCAGTTGACTTACTTATTGATGAAAGTACAAGGGTTCTTCTAATAACTGGTCCTAACACAGGAGGCAAAACTATTTGTTTGAAATCAGTTGGACTTGCTGCTATCATGGCAAAAACAGGTCTTTATGTTTTATGTTCTGAACCAGCACGAATCCCATGGTTTGATTGTGTTTTTGCTGATATTGGTGATGAGCAGTCATTGTCTCAGTCTTTGTCAACCTTCTCTGGACACCTCAGGCAGATTAGTGATATACAAGCAAAGTCAACCAATCAATCACTGGTGCTTTTAGATGAAATTGGTGCAGGCACCAATCCCCTAGAGGGTGCAGCACTCGGGATGTCTGTGCTAGAATCTTTTGCTGAAGCTGATGCTTTATTAACCTTAGCCACAACACATCATGGTGAACTCAAAACCCTTAAATACAGCAATGACGCCTTTGAGAACGCATGTGTGGAGTTTGATGAAGTCAACTTGAAGCCAACTTATAAGATTCTTTGGGGAGTTCCAGGTCGTTCAAATGCAATAAATATAGCAGAAAGGTTAGGATTTCCAAAATCAATTTTATGTAATGCTCGTCAACTGTATGGAGTTGCCAGTGCGGAGATAGATGAGGTCATATATGAATTGGAAAAGTTCAAGCAAGATGTTGAAGAACATGTATATGAAGCACACAATCATCTGATGGTCTCAAGAGAACTTCATGAGAAGGTACTTAATGTCCAAAGAAAGCTTGCTGTGCATAGATCTGATCTTAGTTATACAAAGATGCAACAAATATCAGAGTATGCATCTAGGGCTCGTTCAACTCTTCACAGGAAGATGCAGCTATATCGTGCATCTGCACGACAGATTCCCAAGCCCACAGGAACAGAACCAAGTGTGCAAGGAGAACCAGTTAACAGCCAGAAGCATGCAGCTGGTGATAATGCTTCCGCTTCAGAAAGTGCAATTGGTATTCCTGTCGAGGAGTCTGAGCAGATGTCATCAGGTGCAGAAAACAGAACTAGATTGCCTATGGTGGGTACTGTTGTTCAACTTCCTTCACTTAGGACCAAGGCAACAGTTCTTCAGGTGGAATCATCTAAAGAAGAGATTTTAGTTCAAGCTGGCAAGTTGAAGCTGAAGTTGAAAATATCTGATATTAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_75969.p1 GENE.R_Transcript_75969~~R_Transcript_75969.p1 ORF type:3prime_partial len:604 (+),score=149.48,MutS_V|PF00488.17|8.5e-40 R_Transcript_75969:884-2692(+)
MSTLIANETNELPSLEARNIDGRWCIRSGTDQLTSFQGLLLSSGSGMGNIIEPISAVPLNDELLEARSSVEDAEAEVLLDITEKMKMDLASIELLLKNIVELDVVNARASYGLSMRGNCPDLLLFDKKNIPLHSEGFSPEVKLANFTKKRWMLCLPKAYHPLLLQQYRHNLREAKKDVAVATAELRRRKLYGENVNQQEAKQIDLQMLEEKVAQLENTHPVPVDLLIDESTRVLLITGPNTGGKTICLKSVGLAAIMAKTGLYVLCSEPARIPWFDCVFADIGDEQSLSQSLSTFSGHLRQISDIQAKSTNQSLVLLDEIGAGTNPLEGAALGMSVLESFAEADALLTLATTHHGELKTLKYSNDAFENACVEFDEVNLKPTYKILWGVPGRSNAINIAERLGFPKSILCNARQLYGVASAEIDEVIYELEKFKQDVEEHVYEAHNHLMVSRELHEKVLNVQRKLAVHRSDLSYTKMQQISEYASRARSTLHRKMQLYRASARQIPKPTGTEPSVQGEPVNSQKHAAGDNASASESAIGIPVEESEQMSSGAENRTRLPMVGTVVQLPSLRTKATVLQVESSKEEILVQAGKLKLKLKISDIK

Click here to download the sequence:
Link to NCBI Protein BLAST