Transcript Information: R_Transcript_77006.p1


Annotated TAIR IDAT4G21070.1
Annotated Gene Namebreast cancer susceptibility1
Annotated Gene Symbol(s)ATBRCA1, BRCA1
Annotation TypeOrtholog
Chromosome Positionchr4:11248174-11252633 | Forward length=941
E-Value3.5E-213
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3572765368336
Replicate 24.1487173340128
Replicate 35.2384515265023
Condition 2: 8 Hour
Replicate 13.7821697110088
Replicate 22.6240954618041
Replicate 34.3694950339949
Condition 3: 24 Hour
Replicate 16.4475286095859
Replicate 25.331311326609
Replicate 36.4543482226157


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_77006.p1 GENE.R_Transcript_77006~~R_Transcript_77006.p1 ORF type:complete len:997 (+),score=195.91,BRCT|PF00533.22|9.2e-08,BRCT|PF00533.22|0.0015,zf-HC5HC2H|PF13771.2|17,zf-HC5HC2H|PF13771.2|3.4e+03,zf-HC5HC2H|PF13771.2|2.8e-11,zf-C3HC4_3|PF13920.2|1.2e-08,zf-C3HC4_3|PF13920.2|4.5e+03,zf-RING_2|PF13639.2|2.6e-08,zf-RING_2|PF13639.2|1.4e+03,zf-RING_2|PF13639.2|24,zf-C3HC4|PF00097.21|6.5e-08,zf-C3HC4|PF00097.21|5.6e+03,zf-RING_6|PF14835.2|4e-07,BRCT_2|PF16589.1|1.4,BRCT_2|PF16589.1|0.0013,zf-C3HC4_2|PF13923.2|2e-07,zf-C3HC4_2|PF13923.2|1.2e+04,zf-HC5HC2H_2|PF13832.2|54,zf-HC5HC2H_2|PF13832.2|1.4e+03,zf-HC5HC2H_2|PF13832.2|7.2e-07,zf-C3HC4_4|PF15227.2|2.3e-06,zf-C3HC4_4|PF15227.2|1.1e+04,zf-RING_UBOX|PF13445.2|3.6e-06,zf-RING_UBOX|PF13445.2|4.1e+02,zf-RING_5|PF14634.2|6e-06,zf-RING_5|PF14634.2|8.9e+03,zf-RING_5|PF14634.2|8.5e+03 R_Transcript_77006:100-2991(+)
ATGGCAGATACATCTCATTTAGAAAGAATGGGCAAAGAGCTCAAATGCCCTATTTGCTTGAGCTTGCTGGAATCTGCTGTCTCTCTTACGTGTAATCATGTTTTCTGCAATGCATGTATTCACAAGTCTTTGAGATCAGGCTCCAATTGCCCAATTTGCAAAGTGCCTTATCAACGTCGAGAAATTCGCCCTGCCCCTCACATGGACAGCCTAGTGAACATATACAAAAGCATGGAAGTCTCTTCGGGGCTTAGCCTTTTTGCTACTCAAAATCCATCCGCAATAAAATCATCAGATGCACCAAAGAAGAGTGCCGATGATGGGTATGCTGGGGCAGAGGAGATTGCTGGAGAAGCCCCAGAATCCGTAAAGGGTATAAAGTCCAAAGCAATGTCAACACCGAAACCAAAAAAATCTGGTCGAAACAGAGGAAAATCTTCTTTCCCAACAAATAAAAGGGTACAAGTGCCACAGTCTCCCATCACTGAGACTCCAGTACGACAAGCAATAGCTCAAATTGAGGCAACCAAATTAAAGAACAATGATGCTAAGAAGAGCTCAGCCAGAGCAAGTGAACATCCATCTTCAAATGATGCTAAGAAGAGTTCAGCCACAGCAAGTGGACATCCATCTTCAAATGGGAAAGGAAGCCCACCCTTGTCACCATTTTTCTGGCTACGGGAAGAACAAGATGTAGAGAAGTTGAGTCAGCAAACTGACCTTGATCATTTGACTGGTACACCAGGGATAATGCCTTCTTTTAGTGATATCAAGGATTCAGATGATGACGCACCCTCTAAAATGTCTCCACGAACACAAGATGAGCTGCTCCGAAACTGCCATAATGCTGATCATTTTGACAGTGAGATGTTTGAATGGACCCAAAGAGCTTGCTCTCCTGAACTTTGCTCCAGTCCTATCAAGATGCAGGTTGGGGAGACAAGTGAATTTGAGAAAATGCAAAAAGACGATTTGGCAACACCCGCAAAAGGTCTGGTTACTGGTAGAGAAGTAATGACAGAGCACCTGGACAACGCCAACCCCCTGGAACATAATAGTATTAGGGATAATGAACTTCAAAGTAATTCCTCAGGAATTAAATATGGTGATAGGAAAAATCGGAGCAAAAAGACCCGCAAGAGAGGTAGGAAAGCAGACAAGAGAACCCAAAATAAGCGTCAAAAGAGAAATGTGGGGCAAGTTAGCAAGGCTCATGATGGTCCAGAAACACATGATGGTTCCACGCAGAGACGAGGATGTGATTCTCTAACAGCTATGGGCAGTTCAAAAGCTGGTTGCACCCATAAAGCCAGTAATATTGGGTCAAACGCTTCGGAGACGCTAAATGAAGTGCATGATCATGTTGCCTCTGAGCTGCCTGCTTCTTTGCAAAAGAGACAGAAAAATTCTAAGGGCATTAAGCGATGCCATATAAAGAGGCAAGTCAGGAGAAAGGAACAGAAGCAGAGTCTTGCTAAATCGGACATAATTGAAGAACCTATTGTTTCTCTAGATGGTGCACATGACGAAGTAGATTTTTGCCAAGGAAAGCTAGGAAATGGAAATAATGATGTTCAATTAGAGGGTGCGGCACAAGCTGAAGAGAAAAATGTGAATCAAGTTCCTAAAATTCATAATCTAGGGTGTTCATTTACAGCAAGAAAAGGTCCTCTTCAACAAGATATGCCAGCTCTGCGCAAATGTGACACAACTTTTAAATGTGCTTTCTGCCATTCAACAGAAGAGACAGAGGAATCTGGGGTGATGCTACATTATAGTGAAGGTCGACCAGTTTCAGAGAAAGATGGTGCAGCTTCTGTCATTCACTCACACAAAAACTGCACAGAGTGGGCGCCAAATGTTTATTTTGAAGATGATACTGCTATCAACCTTGAAGAAGAGTTGGCAAGAAGCAGAAGAATTAAGTGCTCTCTGTGTGGGGTGAAAGGGGCAGCTCTTGGCTGTTATGAGAAAAGCTGTCGCAAAAGTTTCCATGTCCCTTGTGCCAAGATGCTTCGGGAGTGTCGTTGGGATACTGATCACTTCGTCATGTTATGCCCAGTTCATGCATCTTCAAAGTTGCCCTATGAATTGCCCACATTTGAGGTGAAAAAAGAAAAGCCCAATCTGAAGCGGAAGTTTCTCCGACAACAATCTCAAGTCAATGCTGGACATAAAACTAACAAAAAGTTGTGGAGTTGTGGGCAATCATCTGAAAAATTAGTTCTCTGCTGTTCAGGTCTTGCAACTGCAGAGAAGGAAACCGTTTCTGAGTTTGCTAAGTTATCTGGAGTTGTGGTATCAAAAAGTTGGAATTCAAATGTTACCCATGTTATTGCTTCAGTAGATGAGAACGAAGCGTGTAGAAGAACCCTGAAAGTTTTGATGGGGATCCTAGAGGGCAAATGGGTACTAAGTATCAAATGGGTTCAGGCTTGCATGAAGGCCACTAGACTAGTCGAGGAGACTCCTTATGAAATCAGTTGTGACATTCATGGAGTCAAGCATGGTCCTCAACTAGGAAGATTAAGATTATTGAATAAGCAACCAAAGCTATTTGCTGGGTTCAAGTTCTATTTCATTGGAGATTTTGTACCATCATACAAGGGATACCTACAAGACCTTGTTACAACTGCTGGAGGAACTGTACTACATCGGAAGCCCATTGCAGAAACCCATAGTACGTTGACATCTGATTCATCCATCCGATCAACAACTATCATAATCTATAGCATTGAGCAGCCCGAGAAATCTGATAGCAACAAGAAGGATATTATTCTAGATCACAGGCGTTTTGATGCAGAAACTCTTGCACGTTCAAGTGGTTCAAAGGTAGCGAATAATTCATGGGTCCTCAGTTGTATAGCTGGGCACAAACTGCTTGATATATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_77006.p1 GENE.R_Transcript_77006~~R_Transcript_77006.p1 ORF type:complete len:997 (+),score=195.91,BRCT|PF00533.22|9.2e-08,BRCT|PF00533.22|0.0015,zf-HC5HC2H|PF13771.2|17,zf-HC5HC2H|PF13771.2|3.4e+03,zf-HC5HC2H|PF13771.2|2.8e-11,zf-C3HC4_3|PF13920.2|1.2e-08,zf-C3HC4_3|PF13920.2|4.5e+03,zf-RING_2|PF13639.2|2.6e-08,zf-RING_2|PF13639.2|1.4e+03,zf-RING_2|PF13639.2|24,zf-C3HC4|PF00097.21|6.5e-08,zf-C3HC4|PF00097.21|5.6e+03,zf-RING_6|PF14835.2|4e-07,BRCT_2|PF16589.1|1.4,BRCT_2|PF16589.1|0.0013,zf-C3HC4_2|PF13923.2|2e-07,zf-C3HC4_2|PF13923.2|1.2e+04,zf-HC5HC2H_2|PF13832.2|54,zf-HC5HC2H_2|PF13832.2|1.4e+03,zf-HC5HC2H_2|PF13832.2|7.2e-07,zf-C3HC4_4|PF15227.2|2.3e-06,zf-C3HC4_4|PF15227.2|1.1e+04,zf-RING_UBOX|PF13445.2|3.6e-06,zf-RING_UBOX|PF13445.2|4.1e+02,zf-RING_5|PF14634.2|6e-06,zf-RING_5|PF14634.2|8.9e+03,zf-RING_5|PF14634.2|8.5e+03 R_Transcript_77006:100-2991(+)
MADTSHLERMGKELKCPICLSLLESAVSLTCNHVFCNACIHKSLRSGSNCPICKVPYQRREIRPAPHMDSLVNIYKSMEVSSGLSLFATQNPSAIKSSDAPKKSADDGYAGAEEIAGEAPESVKGIKSKAMSTPKPKKSGRNRGKSSFPTNKRVQVPQSPITETPVRQAIAQIEATKLKNNDAKKSSARASEHPSSNDAKKSSATASGHPSSNGKGSPPLSPFFWLREEQDVEKLSQQTDLDHLTGTPGIMPSFSDIKDSDDDAPSKMSPRTQDELLRNCHNADHFDSEMFEWTQRACSPELCSSPIKMQVGETSEFEKMQKDDLATPAKGLVTGREVMTEHLDNANPLEHNSIRDNELQSNSSGIKYGDRKNRSKKTRKRGRKADKRTQNKRQKRNVGQVSKAHDGPETHDGSTQRRGCDSLTAMGSSKAGCTHKASNIGSNASETLNEVHDHVASELPASLQKRQKNSKGIKRCHIKRQVRRKEQKQSLAKSDIIEEPIVSLDGAHDEVDFCQGKLGNGNNDVQLEGAAQAEEKNVNQVPKIHNLGCSFTARKGPLQQDMPALRKCDTTFKCAFCHSTEETEESGVMLHYSEGRPVSEKDGAASVIHSHKNCTEWAPNVYFEDDTAINLEEELARSRRIKCSLCGVKGAALGCYEKSCRKSFHVPCAKMLRECRWDTDHFVMLCPVHASSKLPYELPTFEVKKEKPNLKRKFLRQQSQVNAGHKTNKKLWSCGQSSEKLVLCCSGLATAEKETVSEFAKLSGVVVSKSWNSNVTHVIASVDENEACRRTLKVLMGILEGKWVLSIKWVQACMKATRLVEETPYEISCDIHGVKHGPQLGRLRLLNKQPKLFAGFKFYFIGDFVPSYKGYLQDLVTTAGGTVLHRKPIAETHSTLTSDSSIRSTTIIIYSIEQPEKSDSNKKDIILDHRRFDAETLARSSGSKVANNSWVLSCIAGHKLLDI*

Click here to download the sequence:
Link to NCBI Protein BLAST