Transcript Information: R_Transcript_77428.p1


Annotated TAIR IDAT1G05990.1
Annotated Gene NameEF hand calcium-binding protein family
Annotated Gene Symbol(s)RHS1
Annotation TypeHomolog
Chromosome Positionchr1:1818588-1819040 | Forward length=150
E-Value4E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.134746791621
Replicate 211.985388154304
Replicate 314.603045217547
Condition 2: 8 Hour
Replicate 110.508517039859
Replicate 217.516024108929
Replicate 330.32831607823
Condition 3: 24 Hour
Replicate 116.070465059393
Replicate 213.968330630699
Replicate 318.148555136219


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_77428.p1 GENE.R_Transcript_77428~~R_Transcript_77428.p1 ORF type:complete len:240 (+),score=71.69,EF-hand_1|PF00036.28|2.2e-07,EF-hand_1|PF00036.28|0.00052,EF-hand_1|PF00036.28|3e-07,EF-hand_1|PF00036.28|7.3e-09,EF-hand_7|PF13499.2|1.5e-14,EF-hand_7|PF13499.2|5.4e-12,EF-hand_6|PF13405.2|4.4e-06,EF-hand_6|PF13405.2|0.016,EF-hand_6|PF13405.2|9e-07,EF-hand_6|PF13405.2|0.00099,EF-hand_5|PF13202.2|2.4e-07,EF-hand_5|PF13202.2|0.03,EF-hand_5|PF13202.2|1.6e+04,EF-hand_5|PF13202.2|2.2e-06,EF-hand_5|PF13202.2|9.4e-06,EF-hand_8|PF13833.2|6.7e-08,EF-hand_8|PF13833.2|6.2e+03,EF-hand_8|PF13833.2|1.2,EF-hand_8|PF13833.2|3e-11,EF-hand_9|PF14658.2|0.21,EF-hand_9|PF14658.2|0.00049,SPARC_Ca_bdg|PF10591.5|0.017,SPARC_Ca_bdg|PF10591.5|0.021 R_Transcript_77428:42-761(+)
ATGTTGATACCAATACTCATATTGATATCTTCAGTTCTTTTTCTTGCTGGTTTTTTGAACTTCAAGTTCCCAAACTCTGCTAAGAAACTCTTATTACAACTCAAGAAACCTTTTCTTCCTTCCCCTGCCTCTCCCCTGCATCCTAGCTCCTCTTCATCTTCTATATCTTCCCAAACAAACACTTCAACAAAAATCATAACAAAGGATGATGGCCTCAAGAAAGTATTCGAGACGTTCGACAAGAATGGAGATGGGTTCATAACAAGGCAAGAGCTTCACGAATCTCTTAAAAACATTGGGCTTTATGTGGCTAACAAGGAAGTGGAAGAAATGGTGGACAACTTGGACTCTAATAGAGATGGGCTGATTGATCTTGGTGAGTTTCAAGAGTTGTATAATTTGATGAAGGGCAAAAAGAATGAGAAGGGAGTTAGTGATAATAATAATGATAATGGTGACAACGATGATGATGATGATGATGGGGAATTGAAGAAGGCATTTGATGTGTTTGATGGGGATAAAGATGGGTTAATATCGGTTGAAGAGCTAAGATTGGTGTTATCTTCCATGGGATTGAATGAAGGGAATAGAGAAGATGCTTGTAAGGCGATGATCAGTAAGGTGGATGTTGATGGGGATGGAAAGGTTAACTTTGAAGAGTTCAAGAAGATGATGAAAATTGGTTATGGTGATTCCATCTTTGATGTCTCTACTCTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_77428.p1 GENE.R_Transcript_77428~~R_Transcript_77428.p1 ORF type:complete len:240 (+),score=71.69,EF-hand_1|PF00036.28|2.2e-07,EF-hand_1|PF00036.28|0.00052,EF-hand_1|PF00036.28|3e-07,EF-hand_1|PF00036.28|7.3e-09,EF-hand_7|PF13499.2|1.5e-14,EF-hand_7|PF13499.2|5.4e-12,EF-hand_6|PF13405.2|4.4e-06,EF-hand_6|PF13405.2|0.016,EF-hand_6|PF13405.2|9e-07,EF-hand_6|PF13405.2|0.00099,EF-hand_5|PF13202.2|2.4e-07,EF-hand_5|PF13202.2|0.03,EF-hand_5|PF13202.2|1.6e+04,EF-hand_5|PF13202.2|2.2e-06,EF-hand_5|PF13202.2|9.4e-06,EF-hand_8|PF13833.2|6.7e-08,EF-hand_8|PF13833.2|6.2e+03,EF-hand_8|PF13833.2|1.2,EF-hand_8|PF13833.2|3e-11,EF-hand_9|PF14658.2|0.21,EF-hand_9|PF14658.2|0.00049,SPARC_Ca_bdg|PF10591.5|0.017,SPARC_Ca_bdg|PF10591.5|0.021 R_Transcript_77428:42-761(+)
MLIPILILISSVLFLAGFLNFKFPNSAKKLLLQLKKPFLPSPASPLHPSSSSSSISSQTNTSTKIITKDDGLKKVFETFDKNGDGFITRQELHESLKNIGLYVANKEVEEMVDNLDSNRDGLIDLGEFQELYNLMKGKKNEKGVSDNNNDNGDNDDDDDDGELKKAFDVFDGDKDGLISVEELRLVLSSMGLNEGNREDACKAMISKVDVDGDGKVNFEEFKKMMKIGYGDSIFDVSTL*

Click here to download the sequence:
Link to NCBI Protein BLAST