Transcript Information: R_Transcript_77499.p1


Annotated TAIR IDAT5G52220.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Chromosome transmission fidelity protein 8 (InterPro:IPR018607); Has 127 Blast hits to 127 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 70; Fungi - 17; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21207097-21207678 | Reverse length=145
E-Value1.2E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.71999294166
Replicate 28.6651398543452
Replicate 39.2717747412998
Condition 2: 8 Hour
Replicate 16.8016291520126
Replicate 25.5014868021964
Replicate 37.7792616944516
Condition 3: 24 Hour
Replicate 111.296698794585
Replicate 212.07787986865
Replicate 315.112938950477


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_77499.p1 GENE.R_Transcript_77499~~R_Transcript_77499.p1 ORF type:complete len:126 (+),score=18.78,Ctf8|PF09696.6|1e-11 R_Transcript_77499:129-506(+)
ATGGCAGCAATACAAGTAAAATGTAGGTGTGGCGAAGGCAAGTGTCCAGAATGGGCAATAATAGAGGTGCAAGGAGTGGTGGAACCTCGCCCCGAGTTCGAGAACCGTCTTCAAAACCTCCAGATCGGCCGTCTTTGCCGCCCCTCTTCTCAGGAAACTTACACTTTTACCATAGGGTACCATGAATTGACAGGGTCCAAGGTGGCTCTGAAAAAGCCGCTATTAGTGCTCAAGAAAGTGAAGCATTCAGATGCTGATCAAAATGGAAGATCTCAATCTTCAAAGGCGGCAGAGTTAGATGTGATCGGAATTATTAGGCAGAAGATTCTGTTCAAGACTCGACCAAAGGCCCTCATAACCAGCAGCAGCAAGAACTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_77499.p1 GENE.R_Transcript_77499~~R_Transcript_77499.p1 ORF type:complete len:126 (+),score=18.78,Ctf8|PF09696.6|1e-11 R_Transcript_77499:129-506(+)
MAAIQVKCRCGEGKCPEWAIIEVQGVVEPRPEFENRLQNLQIGRLCRPSSQETYTFTIGYHELTGSKVALKKPLLVLKKVKHSDADQNGRSQSSKAAELDVIGIIRQKILFKTRPKALITSSSKN*

Click here to download the sequence:
Link to NCBI Protein BLAST