Transcript Information: R_Transcript_77950.p1


Annotated TAIR IDAT5G48460.1
Annotated Gene NameActin binding Calponin Homology (CH) domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19636225-19639365 | Reverse length=654
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.932561461009
Replicate 223.763994562083
Replicate 329.396979915062
Condition 2: 8 Hour
Replicate 114.951217535969
Replicate 212.908327244684
Replicate 317.05151300703
Condition 3: 24 Hour
Replicate 131.271316208645
Replicate 226.165557138367
Replicate 331.372376717886


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_77950.p1 GENE.R_Transcript_77950~~R_Transcript_77950.p1 ORF type:complete len:660 (+),score=117.14,CH|PF00307.27|2.2e-15,CH|PF00307.27|6.3e-20,CH|PF00307.27|2.9e-17,CH|PF00307.27|8.3e-12,CAMSAP_CH|PF11971.4|0.017,CAMSAP_CH|PF11971.4|9.4,CAMSAP_CH|PF11971.4|0.13,CAMSAP_CH|PF11971.4|5.6,CH_2|PF06294.7|2.4e+03,CH_2|PF06294.7|53,CH_2|PF06294.7|0.92,CH_2|PF06294.7|1.4 R_Transcript_77950:323-2302(+)
ATGGCTATGGCAGGTTACGTAGGTATTCTGGTATCAGATCCATGGCTTCAGAATCAGTTCACTCAAGTCGAGCTTCGCAGCTTGAAATCTCAGTACCATACGATGAGGAGAGAGAGTGGACCTCTCAATCTAGCCGATTTGCCGTTAAAGATGTCCAAGCTCAAGGTCGTCGGTGAAAACCTAACTGAACAAGAGAGAGAATCGTTTCTTCGCTCTTCGTATCAGAACTTGAATGATGAGGTCGATTTTGAGCTCTTTCTTCGGGTGTATTTACAACTGCATGCACACGCAAGTTCAAAAATGGGCAGTCCAGCGAAGAACTCATCAGCATTTCTCAAAGCTGCTACTACTACATTGCTTCACACAATTAGCGAGTCTGAAAAATCATCTTATGTCACACACATCAACAATTATCTCGGAGAAGACAAGTTCTTGAGGCAATACCTTCCTATAGATCCTTCAACCAATGATCTGTTTGAGATTGTGAAGGATGGCGTTCTTCTCTGTAAGCTTATCAACGTGGCGGTTCCTGGGACAATTGATGAACGCGCTATTAACATGAAGAGGATGCTCAACCCTTGGGAGAGGAATGAAAACCACACTCTATGCCTTAACTCAGCAAAGGCTATAGGGTGTACAGTGGTTAACATTGGAACTCAAGATTTTATCGAAGGAAGACGTCATCTTGTGTTTGGATTAATTGCGCAAATCATAAAGATACAACTTTTGGCTGACCTCAATTTAAAGAAAACACCTCAATTGGTTGAGCTGGTGAATAGTAGCGAGGATGCAGAAGAGTTGATGAGTCTTCCACCAGAAAAGATTTTGCTGAGATGGATGAACTTCCAACTTAAAAAGGCTGGATACAAGAAAGTTGTGACGAACTTCTCCTCTGATATTAAGGATGGAGAAGCTTATGCTCATCTCTTAAATGTTCTTGCTCCAGAACATAAAAATCCAAAGACATTGACTGTAAAAGATCCCCTCCACAGAGCAAAATTAATACTTGAACATGCTGACAAGATGGGATGTAAAAGATATTTGACAGCAAAGGACATAGTAGAAGGTTCACCCAATCTCAACCTCGCATTCGTTGCACACATATTTCAGCATAGGAATGGGCTGTCTACTCAAACCAAGCAGATATCTTTTCTAGAAACTTCTCCTGATGATGCTCAAGTTTCGCGAGAAGAAAGAGCTTTTCGCTTTTGGCTAAACAGTCTTGGTAATTCAACATGCATTGACAATGTATTTGAGGATCTTAGAGATGGATGGATTCTCCTAGAGACACTAGACAAGGTGTCACCAGGCATTGTCAATTGGAAGATTGCTAGCAAGCCACCCATCAAGATGCCATTCAAGAAAGTTGAGAACTGTAATCAAGCAGTAAAGTTGGGGAAACAACTGAAGTTTTCCTTGGTCAATATTGCAGGAAATGATATTGTGCAAGGAAATAAAAAATTGATATTAGCATACTTGTGGCAATTGATGCGGTGTAACATGATCCAACTCCTGAAGAATTTGAGATACCATTCGCATGGGAAGGAAATCAATGATGCTGATATTCTAGAATGGGCTAACACTCTAGTGAAGAACTCTGGAGGGCAGTCATGCATGAAAAGTTTCAAGGACAAGAGTTTGTCAGGTGGTATGTTTTTCCTTGAGCTTCTCAGTGCAGTGCAACCTAGAGTAGTGAACTGGAGTCTCGTTACAAAGGGAAAAAGTGATGAGGAGAAGAAGATGAATGCCTCATACATCATTAGTGTAGCACGGAAACTTGGGTGTTCAATATTTCTGCTTCCTGAAGACATTACTGAGGTCAACCAAAAGATGATCTTGACATTAACAGCTAGCATAATGTATTGGTTCTTGAATCAACCTGTTGAAGAGAAGTCATCTGGTTCATCAGACAGTGAGAACGGGAGCCAATCTGAAACGACAACCCTGGATGACACTGCATCCGAATCATCATTAGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_77950.p1 GENE.R_Transcript_77950~~R_Transcript_77950.p1 ORF type:complete len:660 (+),score=117.14,CH|PF00307.27|2.2e-15,CH|PF00307.27|6.3e-20,CH|PF00307.27|2.9e-17,CH|PF00307.27|8.3e-12,CAMSAP_CH|PF11971.4|0.017,CAMSAP_CH|PF11971.4|9.4,CAMSAP_CH|PF11971.4|0.13,CAMSAP_CH|PF11971.4|5.6,CH_2|PF06294.7|2.4e+03,CH_2|PF06294.7|53,CH_2|PF06294.7|0.92,CH_2|PF06294.7|1.4 R_Transcript_77950:323-2302(+)
MAMAGYVGILVSDPWLQNQFTQVELRSLKSQYHTMRRESGPLNLADLPLKMSKLKVVGENLTEQERESFLRSSYQNLNDEVDFELFLRVYLQLHAHASSKMGSPAKNSSAFLKAATTTLLHTISESEKSSYVTHINNYLGEDKFLRQYLPIDPSTNDLFEIVKDGVLLCKLINVAVPGTIDERAINMKRMLNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVFGLIAQIIKIQLLADLNLKKTPQLVELVNSSEDAEELMSLPPEKILLRWMNFQLKKAGYKKVVTNFSSDIKDGEAYAHLLNVLAPEHKNPKTLTVKDPLHRAKLILEHADKMGCKRYLTAKDIVEGSPNLNLAFVAHIFQHRNGLSTQTKQISFLETSPDDAQVSREERAFRFWLNSLGNSTCIDNVFEDLRDGWILLETLDKVSPGIVNWKIASKPPIKMPFKKVENCNQAVKLGKQLKFSLVNIAGNDIVQGNKKLILAYLWQLMRCNMIQLLKNLRYHSHGKEINDADILEWANTLVKNSGGQSCMKSFKDKSLSGGMFFLELLSAVQPRVVNWSLVTKGKSDEEKKMNASYIISVARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLNQPVEEKSSGSSDSENGSQSETTTLDDTASESSLE*

Click here to download the sequence:
Link to NCBI Protein BLAST