Transcript Information: R_Transcript_78113.p1


Annotated TAIR IDAT5G46680.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:18941118-18942524 | Forward length=468
E-Value1.3E-165
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.220825076568
Replicate 22.3838594359116
Replicate 32.6507796781574
Condition 2: 8 Hour
Replicate 13.2612178204846
Replicate 24.1011224337546
Replicate 35.9448506398647
Condition 3: 24 Hour
Replicate 14.8622430154744
Replicate 23.9006025548838
Replicate 35.448031297612


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_78113.p1 GENE.R_Transcript_78113~~R_Transcript_78113.p1 ORF type:complete len:458 (+),score=67.77,PPR_2|PF13041.2|6.4e-09,PPR_2|PF13041.2|5.2e-12,PPR_2|PF13041.2|6.1e-12,PPR_2|PF13041.2|5.1e-14,PPR_2|PF13041.2|2.1e-16,PPR_2|PF13041.2|4e-12,PPR_2|PF13041.2|2.7e-10,PPR_2|PF13041.2|0.31,PPR_2|PF13041.2|4.5e-18,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|3.5e-11,PPR_2|PF13041.2|0.32,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|0.00033,PPR_1|PF12854.3|5.3e-07,PPR_1|PF12854.3|4.9e-08,PPR_1|PF12854.3|1.5e-10,PPR_1|PF12854.3|1.2e-06,PPR_1|PF12854.3|3.2e-09,PPR_1|PF12854.3|1.7e-07,PPR_1|PF12854.3|7.3e-09,PPR_1|PF12854.3|0.012,PPR|PF01535.16|0.025,PPR|PF01535.16|0.0026,PPR|PF01535.16|0.00074,PPR|PF01535.16|6.9e-06,PPR|PF01535.16|1.6e-07,PPR|PF01535.16|5.6e-07,PPR|PF01535.16|2.4e-08,PPR|PF01535.16|0.71,PPR|PF01535.16|4.8e-09,PPR|PF01535.16|0.00038,PPR|PF01535.16|5e-08,PPR|PF01535.16|0.047,PPR_3|PF13812.2|6.7,PPR_3|PF13812.2|0.00052,PPR_3|PF13812.2|5.4e-05,PPR_3|PF13812.2|0.0023,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|8.9e-05,PPR_3|PF13812.2|1.1e-06,PPR_3|PF13812.2|41,PPR_3|PF13812.2|5.5e-05,PPR_3|PF13812.2|0.0023,PPR_3|PF13812.2|0.0058,PPR_3|PF13812.2|77,PPR_3|PF13812.2|3.2e+03,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|17,TPR_19|PF14559.2|5.1e+02,TPR_19|PF14559.2|8.4,TPR_19|PF14559.2|90,TPR_19|PF14559.2|30,MRP-S27|PF10037.5|2.4e+02,MRP-S27|PF10037.5|1.1e+02,MRP-S27|PF10037.5|5.2,MRP-S27|PF10037.5|0.29,MRP-S27|PF10037.5|3,TPR_12|PF13424.2|1.8e+02,TPR_12|PF13424.2|5,TPR_12|PF13424.2|61,TPR_12|PF13424.2|3.1,TPR_12|PF13424.2|5.6e+03,TPR_11|PF13414.2|85,TPR_11|PF13414.2|0.025,TPR_11|PF13414.2|2.1e+02,TPR_11|PF13414.2|3.2e+02,TPR_14|PF13428.2|1.2e+02,TPR_14|PF13428.2|0.7,TPR_14|PF13428.2|6.1e+03,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1.4e+03,TPR_14|PF13428.2|1.6e+04 R_Transcript_78113:56-1429(+)
ATGCACAGCAGACTATCTACTAGATTGCTGAACATATGCATTTCTTCGTTCTGTAAATTACGAAGACTTGATAAAGCAGAAGCTGTCTTAATTGATGCTATAAGGTTAGGGGTTCTACCTGATGTGGTGACATATAACACTCTAGTTGCTGCATATTGCCGTTTGGTTAGCATAGATGCAGGTTACTCAGTTGTTCAGAGGATGGAAGTAGCTGGTATTAAACCTAATGTAATTACTTATAATTCTTTGTTGGCGGGTGCTAGCAGACAGTGCCAACTAAATCTTTCTCTTGATCTTTTTGAGGAGATGATGAAGTTGGGTATTTCTCCGAATTTGTGGAGTTATAATACGTTGATGCATTGCTTCTTTAGATTAGGAAAACCTGATGAAGCTTATAGGGTGTTTCGGGATATCATTGTTAATGATATCTCTCCTGATACAACTAGTTTCAACACCTTGATTAATGGGTTGTGTAAGAATGGGTATGCTGAGAATGCCCTCATGTTGTATAGGAATTTGAAGCGCCATGGCTGCGAGATTGAGCTAATAACATATAATATTCTTATTGATGGCCTGTGTAAAGCGGGTAGGCTGAAGGCTGCTAGGTGGATTCTTCAAGAGCTTAGTGATTCGGGCTTTGCTCCCAATGCTATTACTTATACTACAATACTGAAATGTTGCTTTAGGTCTCGGAAGTTTGAGGAGGCTCTGGAGATTTTCTCCGAAATGAAGAGTAAAGGTTACACATATGATGGCTTTGCATATTGCACAGTTGCTGGAGCTTTGGTTAAGAAACGCAGGCTACAGGAGGCAAATGATTGCCTCATAGCAATGTTGAGTAGTGGGGTTGAACTAGATCTTGTGTCGTATAATACCATGATGAATCTTTGTTGTAAAGAGGGGAAGTTGGAGGCTGCATATGAATTGTTGGATGAGATAGAGAAAAAAGGTTTGGAATGTGACAAGTATACTCACACCATTCTAATTGATGGATTGTGCAAGGCAGGGAACATTGAGGGGGCCCAGAAACATTTACATTATATGAGTTCAACAGGCTTTCAATCTAATTTGGTGGCATTTAATAGTTTGATTGACGGGATGTGTAAATCTGGCCAGTTTGATCATGCAATGAGAATATTTAAGTCAATGAAGATGAAGGATGAATTTACCTATTCCTCCATGGTGCAAAATCTTTGCAGGGAAAGGAGGTTTAGAAGTGCGTCTAAACTCTTACTATCATGTTTAAAGAATGGGATGAAGATCCTCAAATCAGCCGAACGTGCAGTTCTTGAAGGTTTTCGTAATTCAGGATTAAGAAGAGATGCAAGGAAACTCCAGTCAAAAATTAAAATTGCAAAGGTTTTATGGTATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_78113.p1 GENE.R_Transcript_78113~~R_Transcript_78113.p1 ORF type:complete len:458 (+),score=67.77,PPR_2|PF13041.2|6.4e-09,PPR_2|PF13041.2|5.2e-12,PPR_2|PF13041.2|6.1e-12,PPR_2|PF13041.2|5.1e-14,PPR_2|PF13041.2|2.1e-16,PPR_2|PF13041.2|4e-12,PPR_2|PF13041.2|2.7e-10,PPR_2|PF13041.2|0.31,PPR_2|PF13041.2|4.5e-18,PPR_2|PF13041.2|0.015,PPR_2|PF13041.2|3.5e-11,PPR_2|PF13041.2|0.32,PPR_1|PF12854.3|0.15,PPR_1|PF12854.3|1.3e-07,PPR_1|PF12854.3|0.00033,PPR_1|PF12854.3|5.3e-07,PPR_1|PF12854.3|4.9e-08,PPR_1|PF12854.3|1.5e-10,PPR_1|PF12854.3|1.2e-06,PPR_1|PF12854.3|3.2e-09,PPR_1|PF12854.3|1.7e-07,PPR_1|PF12854.3|7.3e-09,PPR_1|PF12854.3|0.012,PPR|PF01535.16|0.025,PPR|PF01535.16|0.0026,PPR|PF01535.16|0.00074,PPR|PF01535.16|6.9e-06,PPR|PF01535.16|1.6e-07,PPR|PF01535.16|5.6e-07,PPR|PF01535.16|2.4e-08,PPR|PF01535.16|0.71,PPR|PF01535.16|4.8e-09,PPR|PF01535.16|0.00038,PPR|PF01535.16|5e-08,PPR|PF01535.16|0.047,PPR_3|PF13812.2|6.7,PPR_3|PF13812.2|0.00052,PPR_3|PF13812.2|5.4e-05,PPR_3|PF13812.2|0.0023,PPR_3|PF13812.2|0.016,PPR_3|PF13812.2|8.9e-05,PPR_3|PF13812.2|1.1e-06,PPR_3|PF13812.2|41,PPR_3|PF13812.2|5.5e-05,PPR_3|PF13812.2|0.0023,PPR_3|PF13812.2|0.0058,PPR_3|PF13812.2|77,PPR_3|PF13812.2|3.2e+03,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|17,TPR_19|PF14559.2|5.1e+02,TPR_19|PF14559.2|8.4,TPR_19|PF14559.2|90,TPR_19|PF14559.2|30,MRP-S27|PF10037.5|2.4e+02,MRP-S27|PF10037.5|1.1e+02,MRP-S27|PF10037.5|5.2,MRP-S27|PF10037.5|0.29,MRP-S27|PF10037.5|3,TPR_12|PF13424.2|1.8e+02,TPR_12|PF13424.2|5,TPR_12|PF13424.2|61,TPR_12|PF13424.2|3.1,TPR_12|PF13424.2|5.6e+03,TPR_11|PF13414.2|85,TPR_11|PF13414.2|0.025,TPR_11|PF13414.2|2.1e+02,TPR_11|PF13414.2|3.2e+02,TPR_14|PF13428.2|1.2e+02,TPR_14|PF13428.2|0.7,TPR_14|PF13428.2|6.1e+03,TPR_14|PF13428.2|1e+03,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|1.4e+03,TPR_14|PF13428.2|1.6e+04 R_Transcript_78113:56-1429(+)
MHSRLSTRLLNICISSFCKLRRLDKAEAVLIDAIRLGVLPDVVTYNTLVAAYCRLVSIDAGYSVVQRMEVAGIKPNVITYNSLLAGASRQCQLNLSLDLFEEMMKLGISPNLWSYNTLMHCFFRLGKPDEAYRVFRDIIVNDISPDTTSFNTLINGLCKNGYAENALMLYRNLKRHGCEIELITYNILIDGLCKAGRLKAARWILQELSDSGFAPNAITYTTILKCCFRSRKFEEALEIFSEMKSKGYTYDGFAYCTVAGALVKKRRLQEANDCLIAMLSSGVELDLVSYNTMMNLCCKEGKLEAAYELLDEIEKKGLECDKYTHTILIDGLCKAGNIEGAQKHLHYMSSTGFQSNLVAFNSLIDGMCKSGQFDHAMRIFKSMKMKDEFTYSSMVQNLCRERRFRSASKLLLSCLKNGMKILKSAERAVLEGFRNSGLRRDARKLQSKIKIAKVLWY*

Click here to download the sequence:
Link to NCBI Protein BLAST